Hb_000155_020

Information

Type -
Description -
Location Contig155: 56892-60240
Sequence    

Annotation

kegg
ID rcu:RCOM_1673220
description Triose phosphate/phosphate translocator, chloroplast precursor, putative
nr
ID XP_012091670.1
description PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID P21727
description Triose phosphate/phosphate translocator, chloroplastic OS=Pisum sativum PE=1 SV=1
trembl
ID A0A067JB26
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21482 PE=4 SV=1
Gene Ontology
ID GO:0016021
description triose phosphate phosphate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13419: 56946-60260 , PASA_asmbl_13420: 56971-58309 , PASA_asmbl_13421: 56940-60177
cDNA
(Sanger)
(ID:Location)		 026_F11.ab1: 58952-60258 , 053_F07.ab1: 58713-60229

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000155_020 0.0 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_011013_040 0.0484948203 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
3 Hb_001159_050 0.0539240331 - - PREDICTED: uncharacterized protein LOC105645952 [Jatropha curcas]
4 Hb_012395_090 0.0594105817 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
5 Hb_002007_220 0.0602895916 - - PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]
6 Hb_010136_010 0.0605157174 - - Putative receptor-like protein kinase [Glycine soja]
7 Hb_004017_030 0.063451278 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]
8 Hb_003937_010 0.0739363555 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
9 Hb_000270_090 0.0763490363 - - nitrate transporter, putative [Ricinus communis]
10 Hb_000025_700 0.0801859884 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
11 Hb_004994_030 0.0814011554 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
12 Hb_000962_090 0.0814974859 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
13 Hb_001321_010 0.0823952294 - - HIGH-CHLOROPHYLL-FLUORESCENCE 101 family protein [Populus trichocarpa]
14 Hb_002702_010 0.0844329776 - - carbohydrate binding protein, putative [Ricinus communis]
15 Hb_007462_020 0.0857227404 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
16 Hb_006618_110 0.0867741959 - - -
17 Hb_005211_080 0.0877978606 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
18 Hb_003038_230 0.0888380256 - - PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Jatropha curcas]
19 Hb_001424_010 0.0890282901 - - serine/threonine protein kinase, putative [Ricinus communis]
20 Hb_018591_020 0.0890790645 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000155_020 Hb_000155_020 Hb_011013_040 Hb_011013_040 Hb_000155_020--Hb_011013_040 Hb_001159_050 Hb_001159_050 Hb_000155_020--Hb_001159_050 Hb_012395_090 Hb_012395_090 Hb_000155_020--Hb_012395_090 Hb_002007_220 Hb_002007_220 Hb_000155_020--Hb_002007_220 Hb_010136_010 Hb_010136_010 Hb_000155_020--Hb_010136_010 Hb_004017_030 Hb_004017_030 Hb_000155_020--Hb_004017_030 Hb_011013_040--Hb_012395_090 Hb_001266_010 Hb_001266_010 Hb_011013_040--Hb_001266_010 Hb_002702_010 Hb_002702_010 Hb_011013_040--Hb_002702_010 Hb_011013_040--Hb_001159_050 Hb_003038_230 Hb_003038_230 Hb_011013_040--Hb_003038_230 Hb_001424_010 Hb_001424_010 Hb_001159_050--Hb_001424_010 Hb_000025_700 Hb_000025_700 Hb_001159_050--Hb_000025_700 Hb_002272_210 Hb_002272_210 Hb_001159_050--Hb_002272_210 Hb_001159_050--Hb_012395_090 Hb_012395_090--Hb_002702_010 Hb_001942_010 Hb_001942_010 Hb_012395_090--Hb_001942_010 Hb_004223_150 Hb_004223_150 Hb_012395_090--Hb_004223_150 Hb_018591_020 Hb_018591_020 Hb_002007_220--Hb_018591_020 Hb_033363_040 Hb_033363_040 Hb_002007_220--Hb_033363_040 Hb_003494_090 Hb_003494_090 Hb_002007_220--Hb_003494_090 Hb_000270_090 Hb_000270_090 Hb_002007_220--Hb_000270_090 Hb_001321_010 Hb_001321_010 Hb_002007_220--Hb_001321_010 Hb_003435_030 Hb_003435_030 Hb_010136_010--Hb_003435_030 Hb_010136_010--Hb_011013_040 Hb_001115_070 Hb_001115_070 Hb_010136_010--Hb_001115_070 Hb_010136_010--Hb_004017_030 Hb_010136_010--Hb_012395_090 Hb_007462_020 Hb_007462_020 Hb_004017_030--Hb_007462_020 Hb_001369_340 Hb_001369_340 Hb_004017_030--Hb_001369_340 Hb_003767_060 Hb_003767_060 Hb_004017_030--Hb_003767_060 Hb_002284_160 Hb_002284_160 Hb_004017_030--Hb_002284_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0150956 42.8393 236.697 103.05 0.0113811 0.0345948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.221298 0.0870551 0 6.25497 243.281

CAGE analysis