Hb_011013_040

Information

Type transcription factor
Description TF Family: C2C2-YABBY
Location Contig11013: 73587-80586
Sequence    

Annotation

kegg
ID rcu:RCOM_0956520
description Axial regulator YABBY2, putative
nr
ID ABK95415.1
description unknown [Populus trichocarpa]
swissprot
ID Q9XFB0
description Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2 PE=2 SV=1
trembl
ID A9PGB2
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0003700
description axial regulator yabby 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03110: 73826-80644
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011013_040 0.0 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
2 Hb_012395_090 0.0477031268 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
3 Hb_000155_020 0.0484948203 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_001266_010 0.0619973227 - - PREDICTED: uncharacterized protein LOC101206474 [Cucumis sativus]
5 Hb_002702_010 0.0653746633 - - carbohydrate binding protein, putative [Ricinus communis]
6 Hb_001159_050 0.0666574269 - - PREDICTED: uncharacterized protein LOC105645952 [Jatropha curcas]
7 Hb_003038_230 0.0712277941 - - PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Jatropha curcas]
8 Hb_010136_010 0.0719364705 - - Putative receptor-like protein kinase [Glycine soja]
9 Hb_001942_010 0.0763454261 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
10 Hb_002007_220 0.0766416338 - - PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]
11 Hb_006618_110 0.0812686222 - - -
12 Hb_004223_150 0.083987708 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
13 Hb_001975_120 0.0870972967 - - chlorophyll a/b binding protein type II [Glycine max]
14 Hb_000007_330 0.0873966018 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
15 Hb_000005_060 0.0881465011 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
16 Hb_000962_090 0.0892582654 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
17 Hb_003937_010 0.0910089885 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
18 Hb_007545_070 0.0913708652 transcription factor TF Family: MYB PREDICTED: myb-related protein 306 [Populus euphratica]
19 Hb_003435_030 0.0933054446 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
20 Hb_000046_120 0.0940563176 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_011013_040 Hb_011013_040 Hb_012395_090 Hb_012395_090 Hb_011013_040--Hb_012395_090 Hb_000155_020 Hb_000155_020 Hb_011013_040--Hb_000155_020 Hb_001266_010 Hb_001266_010 Hb_011013_040--Hb_001266_010 Hb_002702_010 Hb_002702_010 Hb_011013_040--Hb_002702_010 Hb_001159_050 Hb_001159_050 Hb_011013_040--Hb_001159_050 Hb_003038_230 Hb_003038_230 Hb_011013_040--Hb_003038_230 Hb_012395_090--Hb_002702_010 Hb_012395_090--Hb_000155_020 Hb_001942_010 Hb_001942_010 Hb_012395_090--Hb_001942_010 Hb_004223_150 Hb_004223_150 Hb_012395_090--Hb_004223_150 Hb_012395_090--Hb_001159_050 Hb_000155_020--Hb_001159_050 Hb_002007_220 Hb_002007_220 Hb_000155_020--Hb_002007_220 Hb_010136_010 Hb_010136_010 Hb_000155_020--Hb_010136_010 Hb_004017_030 Hb_004017_030 Hb_000155_020--Hb_004017_030 Hb_000005_060 Hb_000005_060 Hb_001266_010--Hb_000005_060 Hb_034235_010 Hb_034235_010 Hb_001266_010--Hb_034235_010 Hb_001975_120 Hb_001975_120 Hb_001266_010--Hb_001975_120 Hb_000069_440 Hb_000069_440 Hb_001266_010--Hb_000069_440 Hb_009476_030 Hb_009476_030 Hb_001266_010--Hb_009476_030 Hb_002702_010--Hb_004223_150 Hb_000046_120 Hb_000046_120 Hb_002702_010--Hb_000046_120 Hb_002702_010--Hb_001942_010 Hb_003371_080 Hb_003371_080 Hb_002702_010--Hb_003371_080 Hb_001424_010 Hb_001424_010 Hb_001159_050--Hb_001424_010 Hb_000025_700 Hb_000025_700 Hb_001159_050--Hb_000025_700 Hb_002272_210 Hb_002272_210 Hb_001159_050--Hb_002272_210 Hb_003038_230--Hb_001266_010 Hb_003038_230--Hb_001975_120 Hb_003038_230--Hb_001424_010 Hb_000697_030 Hb_000697_030 Hb_003038_230--Hb_000697_030 Hb_003038_230--Hb_001159_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0250438 3.61053 26.3779 13.1883 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0360844 0 0.68077 24.6428

CAGE analysis