Hb_002272_210

Information

Type -
Description -
Location Contig2272: 131042-133298
Sequence    

Annotation

kegg
ID rcu:RCOM_1430470
description hypothetical protein
nr
ID XP_012089106.1
description PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
swissprot
ID Q9ZVL6
description UPF0603 protein At1g54780, chloroplastic OS=Arabidopsis thaliana GN=At1g54780 PE=1 SV=1
trembl
ID A0A067JHX5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23384 PE=4 SV=1
Gene Ontology
ID GO:0009534
description upf0603 protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23689: 130967-133262 , PASA_asmbl_23693: 134017-134147
cDNA
(Sanger)
(ID:Location)		 053_O13.ab1: 132394-133258

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002272_210 0.0 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
2 Hb_003623_080 0.03691464 - - PREDICTED: pheophytinase, chloroplastic [Populus euphratica]
3 Hb_001343_030 0.0588057735 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
4 Hb_007597_030 0.0612843409 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_001006_040 0.0613173504 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
6 Hb_146225_020 0.0659314952 - - chlorophyll A/B binding protein, putative [Ricinus communis]
7 Hb_001975_120 0.069132187 - - chlorophyll a/b binding protein type II [Glycine max]
8 Hb_001159_050 0.0692600023 - - PREDICTED: uncharacterized protein LOC105645952 [Jatropha curcas]
9 Hb_001292_030 0.0704631883 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
10 Hb_000254_130 0.0724524279 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
11 Hb_001975_100 0.0732275632 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
12 Hb_008225_050 0.07438284 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
13 Hb_000608_270 0.0747602838 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002375_030 0.0762812554 - - F-box family protein [Populus trichocarpa]
15 Hb_000460_040 0.0762932458 - - PREDICTED: protein phosphatase 2C 57 [Jatropha curcas]
16 Hb_002785_030 0.0763590086 - - Polyketide cyclase/dehydrase and lipid transport superfamily protein [Theobroma cacao]
17 Hb_000719_030 0.0771208698 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
18 Hb_008195_070 0.0788580366 - - PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_005329_010 0.0794929032 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
20 Hb_001322_120 0.0809769821 - - nutrient reservoir, putative [Ricinus communis]

Gene co-expression network

sample Hb_002272_210 Hb_002272_210 Hb_003623_080 Hb_003623_080 Hb_002272_210--Hb_003623_080 Hb_001343_030 Hb_001343_030 Hb_002272_210--Hb_001343_030 Hb_007597_030 Hb_007597_030 Hb_002272_210--Hb_007597_030 Hb_001006_040 Hb_001006_040 Hb_002272_210--Hb_001006_040 Hb_146225_020 Hb_146225_020 Hb_002272_210--Hb_146225_020 Hb_001975_120 Hb_001975_120 Hb_002272_210--Hb_001975_120 Hb_008225_050 Hb_008225_050 Hb_003623_080--Hb_008225_050 Hb_003623_080--Hb_001006_040 Hb_000254_130 Hb_000254_130 Hb_003623_080--Hb_000254_130 Hb_001488_230 Hb_001488_230 Hb_003623_080--Hb_001488_230 Hb_003623_080--Hb_146225_020 Hb_000962_090 Hb_000962_090 Hb_001343_030--Hb_000962_090 Hb_001343_030--Hb_001975_120 Hb_000530_040 Hb_000530_040 Hb_001343_030--Hb_000530_040 Hb_005211_080 Hb_005211_080 Hb_001343_030--Hb_005211_080 Hb_000359_050 Hb_000359_050 Hb_001343_030--Hb_000359_050 Hb_005000_110 Hb_005000_110 Hb_007597_030--Hb_005000_110 Hb_007597_030--Hb_001343_030 Hb_000460_040 Hb_000460_040 Hb_007597_030--Hb_000460_040 Hb_007597_030--Hb_003623_080 Hb_007597_030--Hb_005211_080 Hb_002785_030 Hb_002785_030 Hb_001006_040--Hb_002785_030 Hb_001292_030 Hb_001292_030 Hb_001006_040--Hb_001292_030 Hb_001975_100 Hb_001975_100 Hb_001006_040--Hb_001975_100 Hb_001322_120 Hb_001322_120 Hb_001006_040--Hb_001322_120 Hb_005063_030 Hb_005063_030 Hb_001006_040--Hb_005063_030 Hb_001028_040 Hb_001028_040 Hb_001006_040--Hb_001028_040 Hb_000719_030 Hb_000719_030 Hb_146225_020--Hb_000719_030 Hb_001135_310 Hb_001135_310 Hb_146225_020--Hb_001135_310 Hb_013726_060 Hb_013726_060 Hb_146225_020--Hb_013726_060 Hb_001675_090 Hb_001675_090 Hb_146225_020--Hb_001675_090 Hb_000531_100 Hb_000531_100 Hb_146225_020--Hb_000531_100 Hb_001571_100 Hb_001571_100 Hb_146225_020--Hb_001571_100 Hb_001975_120--Hb_000530_040 Hb_000697_030 Hb_000697_030 Hb_001975_120--Hb_000697_030 Hb_005345_020 Hb_005345_020 Hb_001975_120--Hb_005345_020 Hb_003573_030 Hb_003573_030 Hb_001975_120--Hb_003573_030 Hb_009476_030 Hb_009476_030 Hb_001975_120--Hb_009476_030 Hb_001424_010 Hb_001424_010 Hb_001975_120--Hb_001424_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0912247 15.0963 167.649 74.0299 0.0393499 0.119295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.603197 0.875895 0.0674765 0.908453 206.022

CAGE analysis