Hb_146225_020

Information

Type -
Description -
Location Contig146225: 11546-12773
Sequence    

Annotation

kegg
ID rcu:RCOM_0644360
description chlorophyll A/B binding protein, putative
nr
ID XP_002528105.1
description chlorophyll A/B binding protein, putative [Ricinus communis]
swissprot
ID Q9XF88
description Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1
trembl
ID B9SQ36
description Chlorophyll A/B binding protein, putative OS=Ricinus communis GN=RCOM_0644360 PE=4 SV=1
Gene Ontology
ID GO:0016020
description chlorophyll a-b binding protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11884: 11564-12801
cDNA
(Sanger)
(ID:Location)		 026_O20.ab1: 11997-12730 , 032_O13.ab1: 11937-12735 , 044_L14.ab1: 11877-12735 , 048_M20.ab1: 11877-12730

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_146225_020 0.0 - - chlorophyll A/B binding protein, putative [Ricinus communis]
2 Hb_000719_030 0.0206804578 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
3 Hb_001135_310 0.035765765 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
4 Hb_013726_060 0.045658585 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
5 Hb_001675_090 0.0531730873 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
6 Hb_000531_100 0.0583781641 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
7 Hb_001571_100 0.058479011 - - chlorophyll A-B binding family protein [Populus trichocarpa]
8 Hb_002818_110 0.0589980565 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
9 Hb_008195_070 0.0591198411 - - PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_001006_040 0.0610493161 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
11 Hb_001292_030 0.0623115026 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
12 Hb_002743_010 0.0636244911 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002272_210 0.0659314952 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
14 Hb_000230_420 0.0662506128 - - GS [Hevea brasiliensis subsp. brasiliensis]
15 Hb_005280_020 0.0662889241 - - glycine cleavage system h protein, putative [Ricinus communis]
16 Hb_001717_060 0.0664607093 - - PREDICTED: xylogen-like protein 11 [Gossypium raimondii]
17 Hb_002529_120 0.0678782036 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
18 Hb_005345_020 0.0688097473 - - Root phototropism protein, putative [Ricinus communis]
19 Hb_001975_120 0.0695309004 - - chlorophyll a/b binding protein type II [Glycine max]
20 Hb_000512_120 0.070002001 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]

Gene co-expression network

sample Hb_146225_020 Hb_146225_020 Hb_000719_030 Hb_000719_030 Hb_146225_020--Hb_000719_030 Hb_001135_310 Hb_001135_310 Hb_146225_020--Hb_001135_310 Hb_013726_060 Hb_013726_060 Hb_146225_020--Hb_013726_060 Hb_001675_090 Hb_001675_090 Hb_146225_020--Hb_001675_090 Hb_000531_100 Hb_000531_100 Hb_146225_020--Hb_000531_100 Hb_001571_100 Hb_001571_100 Hb_146225_020--Hb_001571_100 Hb_000719_030--Hb_001135_310 Hb_000719_030--Hb_001675_090 Hb_002818_110 Hb_002818_110 Hb_000719_030--Hb_002818_110 Hb_000719_030--Hb_013726_060 Hb_000719_030--Hb_001571_100 Hb_005280_020 Hb_005280_020 Hb_001135_310--Hb_005280_020 Hb_002743_010 Hb_002743_010 Hb_001135_310--Hb_002743_010 Hb_001135_310--Hb_002818_110 Hb_000915_210 Hb_000915_210 Hb_001135_310--Hb_000915_210 Hb_013726_060--Hb_000531_100 Hb_001717_060 Hb_001717_060 Hb_013726_060--Hb_001717_060 Hb_001766_160 Hb_001766_160 Hb_013726_060--Hb_001766_160 Hb_002529_120 Hb_002529_120 Hb_013726_060--Hb_002529_120 Hb_005345_020 Hb_005345_020 Hb_001675_090--Hb_005345_020 Hb_001675_090--Hb_002818_110 Hb_000210_030 Hb_000210_030 Hb_001675_090--Hb_000210_030 Hb_000061_010 Hb_000061_010 Hb_001675_090--Hb_000061_010 Hb_009476_030 Hb_009476_030 Hb_001675_090--Hb_009476_030 Hb_001292_030 Hb_001292_030 Hb_000531_100--Hb_001292_030 Hb_000531_100--Hb_002529_120 Hb_000230_420 Hb_000230_420 Hb_000531_100--Hb_000230_420 Hb_001322_120 Hb_001322_120 Hb_000531_100--Hb_001322_120 Hb_005276_080 Hb_005276_080 Hb_000531_100--Hb_005276_080 Hb_001571_100--Hb_002743_010 Hb_002028_020 Hb_002028_020 Hb_001571_100--Hb_002028_020 Hb_001571_100--Hb_005345_020 Hb_000333_010 Hb_000333_010 Hb_001571_100--Hb_000333_010 Hb_041433_010 Hb_041433_010 Hb_001571_100--Hb_041433_010 Hb_000557_070 Hb_000557_070 Hb_001571_100--Hb_000557_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0190395 51.6656 1365.23 496.962 0.114551 0.385172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.957468 1.06122 0 6.16427 1654.04

CAGE analysis