Hb_002529_120

Information

Type -
Description -
Location Contig2529: 197242-198617
Sequence    

Annotation

kegg
ID pop:POPTR_0009s10640g
description POPTRDRAFT_821228; cyclin dependent kinase inhibitor family protein
nr
ID XP_012066894.1
description PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
swissprot
ID Q94CL9
description Cyclin-dependent kinase inhibitor 7 OS=Arabidopsis thaliana GN=KRP7 PE=1 SV=2
trembl
ID A0A067L1I1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01640 PE=4 SV=1
Gene Ontology
ID GO:0005634
description cyclin dependent kinase inhibitor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26464: 197393-198624
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002529_120 0.0 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
2 Hb_002785_030 0.0417597364 - - Polyketide cyclase/dehydrase and lipid transport superfamily protein [Theobroma cacao]
3 Hb_001322_120 0.0446279526 - - nutrient reservoir, putative [Ricinus communis]
4 Hb_000531_100 0.0485488354 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
5 Hb_001292_030 0.0600336777 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
6 Hb_013726_060 0.0609526124 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
7 Hb_001006_040 0.062287445 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
8 Hb_000088_230 0.0670162959 - - hypothetical protein POPTR_0013s11340g [Populus trichocarpa]
9 Hb_001766_160 0.0677067648 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
10 Hb_146225_020 0.0678782036 - - chlorophyll A/B binding protein, putative [Ricinus communis]
11 Hb_004712_220 0.0689435271 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000139_310 0.0706310119 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
13 Hb_006570_030 0.0736200605 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
14 Hb_005649_060 0.0740236138 - - PREDICTED: uncharacterized protein LOC105644161 [Jatropha curcas]
15 Hb_001028_040 0.0761248127 - - hypothetical protein POPTR_0018s09860g [Populus trichocarpa]
16 Hb_001006_150 0.0771915567 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
17 Hb_002818_110 0.0775630191 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
18 Hb_000719_030 0.0789709153 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
19 Hb_000230_420 0.0793924636 - - GS [Hevea brasiliensis subsp. brasiliensis]
20 Hb_002368_060 0.079572849 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002529_120 Hb_002529_120 Hb_002785_030 Hb_002785_030 Hb_002529_120--Hb_002785_030 Hb_001322_120 Hb_001322_120 Hb_002529_120--Hb_001322_120 Hb_000531_100 Hb_000531_100 Hb_002529_120--Hb_000531_100 Hb_001292_030 Hb_001292_030 Hb_002529_120--Hb_001292_030 Hb_013726_060 Hb_013726_060 Hb_002529_120--Hb_013726_060 Hb_001006_040 Hb_001006_040 Hb_002529_120--Hb_001006_040 Hb_002785_030--Hb_001006_040 Hb_002785_030--Hb_001292_030 Hb_002785_030--Hb_001322_120 Hb_001028_040 Hb_001028_040 Hb_002785_030--Hb_001028_040 Hb_002368_060 Hb_002368_060 Hb_002785_030--Hb_002368_060 Hb_001322_120--Hb_001292_030 Hb_006570_030 Hb_006570_030 Hb_001322_120--Hb_006570_030 Hb_001322_120--Hb_001006_040 Hb_001766_160 Hb_001766_160 Hb_001322_120--Hb_001766_160 Hb_000531_100--Hb_013726_060 Hb_000531_100--Hb_001292_030 Hb_000230_420 Hb_000230_420 Hb_000531_100--Hb_000230_420 Hb_000531_100--Hb_001322_120 Hb_005276_080 Hb_005276_080 Hb_000531_100--Hb_005276_080 Hb_001292_030--Hb_001006_040 Hb_001292_030--Hb_000230_420 Hb_001292_030--Hb_006570_030 Hb_001975_100 Hb_001975_100 Hb_001292_030--Hb_001975_100 Hb_146225_020 Hb_146225_020 Hb_013726_060--Hb_146225_020 Hb_000719_030 Hb_000719_030 Hb_013726_060--Hb_000719_030 Hb_001717_060 Hb_001717_060 Hb_013726_060--Hb_001717_060 Hb_013726_060--Hb_001766_160 Hb_001006_040--Hb_001975_100 Hb_005063_030 Hb_005063_030 Hb_001006_040--Hb_005063_030 Hb_001006_040--Hb_001028_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0410956 0.562145 0.155945 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.715714

CAGE analysis