Hb_005280_020

Information

Type -
Description -
Location Contig5280: 81870-83250
Sequence    

Annotation

kegg
ID rcu:RCOM_0865200
description glycine cleavage system h protein, putative
nr
ID XP_002519845.1
description glycine cleavage system h protein, putative [Ricinus communis]
swissprot
ID Q39732
description Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala GN=GDCSH PE=2 SV=1
trembl
ID B9S1I0
description Glycine cleavage system h protein, putative OS=Ricinus communis GN=RCOM_0865200 PE=3 SV=1
Gene Ontology
ID GO:0005960
description glycine cleavage system h mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47137: 81674-83256
cDNA
(Sanger)
(ID:Location)		 014_D20.ab1: 81736-83233 , 022_M14.ab1: 81738-83233 , 026_H05.ab1: 81683-83238 , 031_D04.ab1: 81736-83233 , 043_G15.ab1: 81734-83233

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005280_020 0.0 - - glycine cleavage system h protein, putative [Ricinus communis]
2 Hb_074312_010 0.0353469598 - - PREDICTED: cytochrome P450 82A3-like [Jatropha curcas]
3 Hb_001135_310 0.0380413951 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
4 Hb_010288_070 0.0402974008 transcription factor TF Family: MYB MYB-like DNA-binding domain protein [Theobroma cacao]
5 Hb_002304_030 0.0406543058 - - hypothetical protein JCGZ_21517 [Jatropha curcas]
6 Hb_005610_070 0.0413594936 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
7 Hb_007187_010 0.0437438239 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
8 Hb_011382_010 0.0489873459 - - hypothetical protein CICLE_v10028106mg [Citrus clementina]
9 Hb_163566_020 0.0494570883 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_005888_020 0.050516086 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
11 Hb_014056_020 0.0513675784 - - zinc finger protein, putative [Ricinus communis]
12 Hb_001205_220 0.0522274569 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002743_010 0.053269455 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000512_120 0.054439665 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
15 Hb_000297_190 0.0550863349 - - cell wall invertase [Manihot esculenta]
16 Hb_003032_080 0.0559583043 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002014_150 0.0572120661 - - monooxygenase, putative [Ricinus communis]
18 Hb_001717_060 0.0573925604 - - PREDICTED: xylogen-like protein 11 [Gossypium raimondii]
19 Hb_000719_030 0.0601429623 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
20 Hb_000915_210 0.0611494277 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005280_020 Hb_005280_020 Hb_074312_010 Hb_074312_010 Hb_005280_020--Hb_074312_010 Hb_001135_310 Hb_001135_310 Hb_005280_020--Hb_001135_310 Hb_010288_070 Hb_010288_070 Hb_005280_020--Hb_010288_070 Hb_002304_030 Hb_002304_030 Hb_005280_020--Hb_002304_030 Hb_005610_070 Hb_005610_070 Hb_005280_020--Hb_005610_070 Hb_007187_010 Hb_007187_010 Hb_005280_020--Hb_007187_010 Hb_074312_010--Hb_005610_070 Hb_011382_010 Hb_011382_010 Hb_074312_010--Hb_011382_010 Hb_163566_020 Hb_163566_020 Hb_074312_010--Hb_163566_020 Hb_074312_010--Hb_007187_010 Hb_002014_150 Hb_002014_150 Hb_074312_010--Hb_002014_150 Hb_074312_010--Hb_010288_070 Hb_000719_030 Hb_000719_030 Hb_001135_310--Hb_000719_030 Hb_146225_020 Hb_146225_020 Hb_001135_310--Hb_146225_020 Hb_002743_010 Hb_002743_010 Hb_001135_310--Hb_002743_010 Hb_002818_110 Hb_002818_110 Hb_001135_310--Hb_002818_110 Hb_000915_210 Hb_000915_210 Hb_001135_310--Hb_000915_210 Hb_010288_070--Hb_002304_030 Hb_005888_020 Hb_005888_020 Hb_010288_070--Hb_005888_020 Hb_003032_080 Hb_003032_080 Hb_010288_070--Hb_003032_080 Hb_010288_070--Hb_005610_070 Hb_003050_380 Hb_003050_380 Hb_010288_070--Hb_003050_380 Hb_002304_030--Hb_005888_020 Hb_000297_190 Hb_000297_190 Hb_002304_030--Hb_000297_190 Hb_001170_020 Hb_001170_020 Hb_002304_030--Hb_001170_020 Hb_002304_030--Hb_005610_070 Hb_002304_030--Hb_003050_380 Hb_005610_070--Hb_011382_010 Hb_005610_070--Hb_002014_150 Hb_005610_070--Hb_163566_020 Hb_007187_010--Hb_011382_010 Hb_009707_020 Hb_009707_020 Hb_007187_010--Hb_009707_020 Hb_000010_160 Hb_000010_160 Hb_007187_010--Hb_000010_160 Hb_001205_220 Hb_001205_220 Hb_007187_010--Hb_001205_220 Hb_000512_120 Hb_000512_120 Hb_007187_010--Hb_000512_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.39848 548.307 185.359 0 0.154515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.645884 0.169188 0 0.0695685 670.53

CAGE analysis