Hb_000210_030

Information

Type transcription factor
Description TF Family: OFP
Location Contig210: 44782-45405
Sequence    

Annotation

kegg
ID rcu:RCOM_0225680
description hypothetical protein
nr
ID XP_012074356.1
description PREDICTED: transcription repressor OFP6 [Jatropha curcas]
swissprot
ID Q3EAL1
description Transcription repressor OFP6 OS=Arabidopsis thaliana GN=OFP6 PE=1 SV=1
trembl
ID A0A067KIT2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08785 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21725: 44612-45191
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000210_030 0.0 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
2 Hb_000262_090 0.0391766025 - - Root phototropism protein, putative [Ricinus communis]
3 Hb_003573_030 0.0410126865 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
4 Hb_002818_110 0.0420089168 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
5 Hb_001675_090 0.0435672518 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
6 Hb_000821_030 0.0497509646 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 [Jatropha curcas]
7 Hb_006573_110 0.0501649839 - - PREDICTED: uncharacterized protein PAM68-like [Jatropha curcas]
8 Hb_008013_020 0.0513893237 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
9 Hb_000018_110 0.052763411 - - hypothetical protein POPTR_0018s00370g [Populus trichocarpa]
10 Hb_003651_030 0.0543339268 - - lyase, putative [Ricinus communis]
11 Hb_000061_010 0.0550770392 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000281_120 0.0555599702 - - protein binding protein, putative [Ricinus communis]
13 Hb_002042_090 0.0576284268 - - PREDICTED: root phototropism protein 3-like [Jatropha curcas]
14 Hb_005345_020 0.0584467993 - - Root phototropism protein, putative [Ricinus communis]
15 Hb_000069_220 0.0612919227 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF023 [Jatropha curcas]
16 Hb_001233_050 0.0643251931 - - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis]
17 Hb_003921_020 0.0645676566 - - hypothetical protein JCGZ_10628 [Jatropha curcas]
18 Hb_009476_030 0.0687817825 - - fatty acid desaturase [Manihot esculenta]
19 Hb_002245_050 0.0692652645 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]
20 Hb_000719_030 0.0699376464 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000210_030 Hb_000210_030 Hb_000262_090 Hb_000262_090 Hb_000210_030--Hb_000262_090 Hb_003573_030 Hb_003573_030 Hb_000210_030--Hb_003573_030 Hb_002818_110 Hb_002818_110 Hb_000210_030--Hb_002818_110 Hb_001675_090 Hb_001675_090 Hb_000210_030--Hb_001675_090 Hb_000821_030 Hb_000821_030 Hb_000210_030--Hb_000821_030 Hb_006573_110 Hb_006573_110 Hb_000210_030--Hb_006573_110 Hb_000262_090--Hb_000821_030 Hb_008013_020 Hb_008013_020 Hb_000262_090--Hb_008013_020 Hb_000262_090--Hb_006573_110 Hb_000018_110 Hb_000018_110 Hb_000262_090--Hb_000018_110 Hb_000262_090--Hb_002818_110 Hb_000281_120 Hb_000281_120 Hb_003573_030--Hb_000281_120 Hb_000697_030 Hb_000697_030 Hb_003573_030--Hb_000697_030 Hb_003651_030 Hb_003651_030 Hb_003573_030--Hb_003651_030 Hb_000069_220 Hb_000069_220 Hb_003573_030--Hb_000069_220 Hb_000530_040 Hb_000530_040 Hb_003573_030--Hb_000530_040 Hb_000061_010 Hb_000061_010 Hb_002818_110--Hb_000061_010 Hb_002818_110--Hb_006573_110 Hb_002818_110--Hb_001675_090 Hb_002818_110--Hb_008013_020 Hb_000719_030 Hb_000719_030 Hb_002818_110--Hb_000719_030 Hb_001675_090--Hb_000719_030 Hb_005345_020 Hb_005345_020 Hb_001675_090--Hb_005345_020 Hb_001675_090--Hb_000061_010 Hb_009476_030 Hb_009476_030 Hb_001675_090--Hb_009476_030 Hb_000821_030--Hb_008013_020 Hb_000821_030--Hb_006573_110 Hb_002245_050 Hb_002245_050 Hb_000821_030--Hb_002245_050 Hb_000174_120 Hb_000174_120 Hb_000821_030--Hb_000174_120 Hb_006573_110--Hb_008013_020 Hb_003921_020 Hb_003921_020 Hb_006573_110--Hb_003921_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.251832 9.77828 2.39726 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0306497 8.02148

CAGE analysis