Hb_006573_110

Information

Type -
Description -
Location Contig6573: 74098-74631
Sequence    

Annotation

kegg
ID rcu:RCOM_1582030
description hypothetical protein
nr
ID XP_012090175.1
description PREDICTED: uncharacterized protein PAM68-like [Jatropha curcas]
swissprot
ID Q9LTD9
description Uncharacterized protein PAM68-like OS=Arabidopsis thaliana GN=At5g52780 PE=2 SV=1
trembl
ID A0A067JHH7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26049 PE=4 SV=1
Gene Ontology
ID GO:0044237
description sterol regulatory element-binding protein cleavage-activating

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52810: 73942-74533
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006573_110 0.0 - - PREDICTED: uncharacterized protein PAM68-like [Jatropha curcas]
2 Hb_008013_020 0.0192553923 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
3 Hb_003921_020 0.0413607769 - - hypothetical protein JCGZ_10628 [Jatropha curcas]
4 Hb_002818_110 0.0422098299 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
5 Hb_000262_090 0.0456619188 - - Root phototropism protein, putative [Ricinus communis]
6 Hb_000210_030 0.0501649839 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
7 Hb_000821_030 0.0506651184 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 [Jatropha curcas]
8 Hb_000061_010 0.0554337722 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000625_080 0.0631941765 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
10 Hb_000281_120 0.0660569412 - - protein binding protein, putative [Ricinus communis]
11 Hb_005618_030 0.0668496803 - - PREDICTED: cytochrome P450 734A1-like [Jatropha curcas]
12 Hb_003573_030 0.0669268772 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
13 Hb_000510_180 0.0669344547 - - unknown [Lotus japonicus]
14 Hb_003605_170 0.0675347119 - - hypothetical protein POPTR_0013s12020g [Populus trichocarpa]
15 Hb_003651_030 0.0681739163 - - lyase, putative [Ricinus communis]
16 Hb_000977_250 0.068770475 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
17 Hb_000018_110 0.0711966791 - - hypothetical protein POPTR_0018s00370g [Populus trichocarpa]
18 Hb_000174_120 0.072535276 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
19 Hb_003836_040 0.0725688153 - - PREDICTED: cytochrome P450 77A3-like [Jatropha curcas]
20 Hb_000937_010 0.072726375 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006573_110 Hb_006573_110 Hb_008013_020 Hb_008013_020 Hb_006573_110--Hb_008013_020 Hb_003921_020 Hb_003921_020 Hb_006573_110--Hb_003921_020 Hb_002818_110 Hb_002818_110 Hb_006573_110--Hb_002818_110 Hb_000262_090 Hb_000262_090 Hb_006573_110--Hb_000262_090 Hb_000210_030 Hb_000210_030 Hb_006573_110--Hb_000210_030 Hb_000821_030 Hb_000821_030 Hb_006573_110--Hb_000821_030 Hb_008013_020--Hb_003921_020 Hb_008013_020--Hb_000262_090 Hb_008013_020--Hb_000821_030 Hb_008013_020--Hb_002818_110 Hb_008013_020--Hb_000210_030 Hb_000281_120 Hb_000281_120 Hb_003921_020--Hb_000281_120 Hb_003921_020--Hb_000262_090 Hb_003921_020--Hb_000821_030 Hb_003651_030 Hb_003651_030 Hb_003921_020--Hb_003651_030 Hb_000061_010 Hb_000061_010 Hb_002818_110--Hb_000061_010 Hb_002818_110--Hb_000210_030 Hb_001675_090 Hb_001675_090 Hb_002818_110--Hb_001675_090 Hb_000719_030 Hb_000719_030 Hb_002818_110--Hb_000719_030 Hb_000262_090--Hb_000821_030 Hb_000262_090--Hb_000210_030 Hb_000018_110 Hb_000018_110 Hb_000262_090--Hb_000018_110 Hb_000262_090--Hb_002818_110 Hb_003573_030 Hb_003573_030 Hb_000210_030--Hb_003573_030 Hb_000210_030--Hb_001675_090 Hb_000210_030--Hb_000821_030 Hb_002245_050 Hb_002245_050 Hb_000821_030--Hb_002245_050 Hb_000174_120 Hb_000174_120 Hb_000821_030--Hb_000174_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.807707 35.6994 6.85963 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 32.1817

CAGE analysis