Hb_003651_030

Information

Type -
Description -
Location Contig3651: 73286-78004
Sequence    

Annotation

kegg
ID rcu:RCOM_0482630
description lyase, putative
nr
ID XP_002527353.1
description lyase, putative [Ricinus communis]
swissprot
ID Q8RJP2
description Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE PE=1 SV=1
trembl
ID B9SMY4
description Lyase, putative OS=Ricinus communis GN=RCOM_0482630 PE=4 SV=1
Gene Ontology
ID GO:0016829
description rhamnogalacturonate lyase b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003651_030 0.0 - - lyase, putative [Ricinus communis]
2 Hb_000281_120 0.0168707608 - - protein binding protein, putative [Ricinus communis]
3 Hb_003573_030 0.0393236261 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
4 Hb_002805_200 0.043043009 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
5 Hb_000210_030 0.0543339268 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
6 Hb_000340_280 0.0554271718 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000359_050 0.0587776253 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
8 Hb_001424_010 0.0612560563 - - serine/threonine protein kinase, putative [Ricinus communis]
9 Hb_000530_040 0.0628425806 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 [Jatropha curcas]
10 Hb_078954_030 0.0637638936 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003921_020 0.0645072465 - - hypothetical protein JCGZ_10628 [Jatropha curcas]
12 Hb_001006_150 0.0647158056 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
13 Hb_101133_030 0.0661126923 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
14 Hb_008013_020 0.0666214479 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
15 Hb_000697_030 0.0676150156 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Pyrus x bretschneideri]
16 Hb_001233_050 0.0679382923 - - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis]
17 Hb_006573_110 0.0681739163 - - PREDICTED: uncharacterized protein PAM68-like [Jatropha curcas]
18 Hb_002818_110 0.0690335303 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
19 Hb_001975_120 0.0697272372 - - chlorophyll a/b binding protein type II [Glycine max]
20 Hb_001864_050 0.0719796401 - - chloroplast oxygen-evolving enhancer protein [Manihot esculenta]

Gene co-expression network

sample Hb_003651_030 Hb_003651_030 Hb_000281_120 Hb_000281_120 Hb_003651_030--Hb_000281_120 Hb_003573_030 Hb_003573_030 Hb_003651_030--Hb_003573_030 Hb_002805_200 Hb_002805_200 Hb_003651_030--Hb_002805_200 Hb_000210_030 Hb_000210_030 Hb_003651_030--Hb_000210_030 Hb_000340_280 Hb_000340_280 Hb_003651_030--Hb_000340_280 Hb_000359_050 Hb_000359_050 Hb_003651_030--Hb_000359_050 Hb_000281_120--Hb_003573_030 Hb_000281_120--Hb_002805_200 Hb_000281_120--Hb_000210_030 Hb_000281_120--Hb_000340_280 Hb_003921_020 Hb_003921_020 Hb_000281_120--Hb_003921_020 Hb_000697_030 Hb_000697_030 Hb_003573_030--Hb_000697_030 Hb_003573_030--Hb_000210_030 Hb_000069_220 Hb_000069_220 Hb_003573_030--Hb_000069_220 Hb_000530_040 Hb_000530_040 Hb_003573_030--Hb_000530_040 Hb_002805_200--Hb_000340_280 Hb_001864_050 Hb_001864_050 Hb_002805_200--Hb_001864_050 Hb_078954_030 Hb_078954_030 Hb_002805_200--Hb_078954_030 Hb_001233_050 Hb_001233_050 Hb_002805_200--Hb_001233_050 Hb_000262_090 Hb_000262_090 Hb_000210_030--Hb_000262_090 Hb_002818_110 Hb_002818_110 Hb_000210_030--Hb_002818_110 Hb_001675_090 Hb_001675_090 Hb_000210_030--Hb_001675_090 Hb_000821_030 Hb_000821_030 Hb_000210_030--Hb_000821_030 Hb_006573_110 Hb_006573_110 Hb_000210_030--Hb_006573_110 Hb_000340_280--Hb_000359_050 Hb_101133_030 Hb_101133_030 Hb_000340_280--Hb_101133_030 Hb_001006_150 Hb_001006_150 Hb_000340_280--Hb_001006_150 Hb_000359_050--Hb_001006_150 Hb_000962_090 Hb_000962_090 Hb_000359_050--Hb_000962_090 Hb_005211_080 Hb_005211_080 Hb_000359_050--Hb_005211_080 Hb_001014_240 Hb_001014_240 Hb_000359_050--Hb_001014_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0859246 1.42077 0.30504 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00740857 1.21793

CAGE analysis