Hb_000262_090

Information

Type -
Description -
Location Contig262: 257090-259979
Sequence    

Annotation

kegg
ID rcu:RCOM_1545860
description Root phototropism protein, putative
nr
ID XP_002515696.1
description Root phototropism protein, putative [Ricinus communis]
swissprot
ID Q9C5J4
description BTB/POZ domain-containing protein At3g22104 OS=Arabidopsis thaliana GN=At3g22104 PE=2 SV=1
trembl
ID B9RPM7
description Root phototropism protein, putative OS=Ricinus communis GN=RCOM_1545860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27401: 257157-258481 , PASA_asmbl_27402: 258548-258877 , PASA_asmbl_27403: 258961-259935
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000262_090 0.0 - - Root phototropism protein, putative [Ricinus communis]
2 Hb_000821_030 0.0328091069 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 [Jatropha curcas]
3 Hb_000210_030 0.0391766025 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
4 Hb_008013_020 0.0432614816 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
5 Hb_006573_110 0.0456619188 - - PREDICTED: uncharacterized protein PAM68-like [Jatropha curcas]
6 Hb_000018_110 0.0526659479 - - hypothetical protein POPTR_0018s00370g [Populus trichocarpa]
7 Hb_002818_110 0.05474744 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
8 Hb_002245_050 0.0563663394 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]
9 Hb_000061_010 0.0568088289 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000174_120 0.0574212774 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
11 Hb_003921_020 0.0603703344 - - hypothetical protein JCGZ_10628 [Jatropha curcas]
12 Hb_003605_170 0.0649378592 - - hypothetical protein POPTR_0013s12020g [Populus trichocarpa]
13 Hb_000142_050 0.066384223 - - PREDICTED: beta-glucosidase 18-like isoform X1 [Populus euphratica]
14 Hb_003836_040 0.0678393038 - - PREDICTED: cytochrome P450 77A3-like [Jatropha curcas]
15 Hb_002284_290 0.0680428804 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
16 Hb_003573_030 0.0696975928 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
17 Hb_001233_050 0.0704869665 - - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis]
18 Hb_001675_090 0.0705445276 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
19 Hb_000414_040 0.0710213637 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
20 Hb_002042_090 0.071518466 - - PREDICTED: root phototropism protein 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000262_090 Hb_000262_090 Hb_000821_030 Hb_000821_030 Hb_000262_090--Hb_000821_030 Hb_000210_030 Hb_000210_030 Hb_000262_090--Hb_000210_030 Hb_008013_020 Hb_008013_020 Hb_000262_090--Hb_008013_020 Hb_006573_110 Hb_006573_110 Hb_000262_090--Hb_006573_110 Hb_000018_110 Hb_000018_110 Hb_000262_090--Hb_000018_110 Hb_002818_110 Hb_002818_110 Hb_000262_090--Hb_002818_110 Hb_000821_030--Hb_008013_020 Hb_000821_030--Hb_000210_030 Hb_000821_030--Hb_006573_110 Hb_002245_050 Hb_002245_050 Hb_000821_030--Hb_002245_050 Hb_000174_120 Hb_000174_120 Hb_000821_030--Hb_000174_120 Hb_003573_030 Hb_003573_030 Hb_000210_030--Hb_003573_030 Hb_000210_030--Hb_002818_110 Hb_001675_090 Hb_001675_090 Hb_000210_030--Hb_001675_090 Hb_000210_030--Hb_006573_110 Hb_008013_020--Hb_006573_110 Hb_003921_020 Hb_003921_020 Hb_008013_020--Hb_003921_020 Hb_008013_020--Hb_002818_110 Hb_008013_020--Hb_000210_030 Hb_006573_110--Hb_003921_020 Hb_006573_110--Hb_002818_110 Hb_145502_010 Hb_145502_010 Hb_000018_110--Hb_145502_010 Hb_147976_010 Hb_147976_010 Hb_000018_110--Hb_147976_010 Hb_001205_140 Hb_001205_140 Hb_000018_110--Hb_001205_140 Hb_000142_050 Hb_000142_050 Hb_000018_110--Hb_000142_050 Hb_000018_110--Hb_002245_050 Hb_003598_070 Hb_003598_070 Hb_000018_110--Hb_003598_070 Hb_000061_010 Hb_000061_010 Hb_002818_110--Hb_000061_010 Hb_002818_110--Hb_001675_090 Hb_000719_030 Hb_000719_030 Hb_002818_110--Hb_000719_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0804035 5.14557 1.05346 0 0.0116436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00846044 4.06177

CAGE analysis