Hb_008013_020

Information

Type -
Description -
Location Contig8013: 35700-37424
Sequence    

Annotation

kegg
ID rcu:RCOM_0868050
description chlorophyll A/B binding protein, putative
nr
ID XP_012072637.1
description PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
swissprot
ID Q9XF89
description Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=1 SV=1
trembl
ID A0A067L139
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06701 PE=4 SV=1
Gene Ontology
ID GO:0009517
description chlorophyll a-b binding protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58789: 35653-37722 , PASA_asmbl_58790: 36661-37113 , PASA_asmbl_58791: 36205-36462
cDNA
(Sanger)
(ID:Location)		 004_P02.ab1: 35653-37131 , 005_J03.ab1: 35653-37165 , 008_O20.ab1: 35653-37047 , 020_F18.ab1: 35653-37111 , 026_M17.ab1: 35653-36868 , 052_I02.ab1: 35705-36835 , 053_P06.ab1: 35670-37099

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008013_020 0.0 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
2 Hb_006573_110 0.0192553923 - - PREDICTED: uncharacterized protein PAM68-like [Jatropha curcas]
3 Hb_003921_020 0.0375782353 - - hypothetical protein JCGZ_10628 [Jatropha curcas]
4 Hb_000262_090 0.0432614816 - - Root phototropism protein, putative [Ricinus communis]
5 Hb_000821_030 0.0451512304 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 [Jatropha curcas]
6 Hb_002818_110 0.0452627437 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
7 Hb_000210_030 0.0513893237 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
8 Hb_005618_030 0.0542353408 - - PREDICTED: cytochrome P450 734A1-like [Jatropha curcas]
9 Hb_000061_010 0.0575840683 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000625_080 0.0590553451 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
11 Hb_000510_180 0.0634124995 - - unknown [Lotus japonicus]
12 Hb_000281_120 0.0636397113 - - protein binding protein, putative [Ricinus communis]
13 Hb_003651_030 0.0666214479 - - lyase, putative [Ricinus communis]
14 Hb_003605_170 0.0682465076 - - hypothetical protein POPTR_0013s12020g [Populus trichocarpa]
15 Hb_000977_250 0.068915985 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
16 Hb_003573_030 0.0710495317 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
17 Hb_000937_010 0.0713970871 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000030_070 0.072059958 - - conserved hypothetical protein [Ricinus communis]
19 Hb_015807_120 0.073881107 - - PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Jatropha curcas]
20 Hb_000174_120 0.0744293109 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_008013_020 Hb_008013_020 Hb_006573_110 Hb_006573_110 Hb_008013_020--Hb_006573_110 Hb_003921_020 Hb_003921_020 Hb_008013_020--Hb_003921_020 Hb_000262_090 Hb_000262_090 Hb_008013_020--Hb_000262_090 Hb_000821_030 Hb_000821_030 Hb_008013_020--Hb_000821_030 Hb_002818_110 Hb_002818_110 Hb_008013_020--Hb_002818_110 Hb_000210_030 Hb_000210_030 Hb_008013_020--Hb_000210_030 Hb_006573_110--Hb_003921_020 Hb_006573_110--Hb_002818_110 Hb_006573_110--Hb_000262_090 Hb_006573_110--Hb_000210_030 Hb_006573_110--Hb_000821_030 Hb_000281_120 Hb_000281_120 Hb_003921_020--Hb_000281_120 Hb_003921_020--Hb_000262_090 Hb_003921_020--Hb_000821_030 Hb_003651_030 Hb_003651_030 Hb_003921_020--Hb_003651_030 Hb_000262_090--Hb_000821_030 Hb_000262_090--Hb_000210_030 Hb_000018_110 Hb_000018_110 Hb_000262_090--Hb_000018_110 Hb_000262_090--Hb_002818_110 Hb_000821_030--Hb_000210_030 Hb_002245_050 Hb_002245_050 Hb_000821_030--Hb_002245_050 Hb_000174_120 Hb_000174_120 Hb_000821_030--Hb_000174_120 Hb_000061_010 Hb_000061_010 Hb_002818_110--Hb_000061_010 Hb_002818_110--Hb_000210_030 Hb_001675_090 Hb_001675_090 Hb_002818_110--Hb_001675_090 Hb_000719_030 Hb_000719_030 Hb_002818_110--Hb_000719_030 Hb_003573_030 Hb_003573_030 Hb_000210_030--Hb_003573_030 Hb_000210_030--Hb_001675_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0644009 61.5746 2779.11 500.664 0.0416536 0.235281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.589751 0.463848 0 2.26817 2477.04

CAGE analysis