Hb_101133_030

Information

Type -
Description -
Location Contig101133: 21640-23497
Sequence    

Annotation

kegg
ID rcu:RCOM_0059770
description DUF26 domain-containing protein 1 precursor, putative
nr
ID XP_002531010.1
description DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
swissprot
ID Q0WPN8
description Cysteine-rich repeat secretory protein 60 OS=Arabidopsis thaliana GN=CRRSP60 PE=1 SV=1
trembl
ID B9SYE1
description DUF26 domain-containing protein 1, putative OS=Ricinus communis GN=RCOM_0059770 PE=4 SV=1
Gene Ontology
ID GO:0009506
description cysteine-rich repeat secretory protein 60

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00609: 21556-23289 , PASA_asmbl_00610: 21802-23511 , PASA_asmbl_00611: 21835-23289
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_101133_030 0.0 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
2 Hb_000340_280 0.0518990447 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000749_140 0.0526498227 - - PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal [Jatropha curcas]
4 Hb_001014_240 0.0632180512 - - PREDICTED: protein NRT1/ PTR FAMILY 6.1 [Jatropha curcas]
5 Hb_000359_050 0.0642755964 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
6 Hb_001233_050 0.0649075838 - - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis]
7 Hb_003651_030 0.0661126923 - - lyase, putative [Ricinus communis]
8 Hb_000281_120 0.0716755543 - - protein binding protein, putative [Ricinus communis]
9 Hb_002805_200 0.0728440855 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
10 Hb_015044_010 0.0733331381 - - hypothetical protein JCGZ_25130 [Jatropha curcas]
11 Hb_001942_060 0.0746704303 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003683_170 0.076918983 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000128_040 0.0774464238 - - PREDICTED: uncharacterized protein LOC105641228 isoform X1 [Jatropha curcas]
14 Hb_001916_110 0.0785859939 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
15 Hb_000809_190 0.0813123792 - - PREDICTED: myosin-6-like [Jatropha curcas]
16 Hb_124677_010 0.0827005346 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001006_150 0.0839827209 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
18 Hb_000210_030 0.0865947646 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
19 Hb_000962_090 0.0920985631 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
20 Hb_003573_030 0.0923289687 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]

Gene co-expression network

sample Hb_101133_030 Hb_101133_030 Hb_000340_280 Hb_000340_280 Hb_101133_030--Hb_000340_280 Hb_000749_140 Hb_000749_140 Hb_101133_030--Hb_000749_140 Hb_001014_240 Hb_001014_240 Hb_101133_030--Hb_001014_240 Hb_000359_050 Hb_000359_050 Hb_101133_030--Hb_000359_050 Hb_001233_050 Hb_001233_050 Hb_101133_030--Hb_001233_050 Hb_003651_030 Hb_003651_030 Hb_101133_030--Hb_003651_030 Hb_000340_280--Hb_000359_050 Hb_002805_200 Hb_002805_200 Hb_000340_280--Hb_002805_200 Hb_000340_280--Hb_003651_030 Hb_000281_120 Hb_000281_120 Hb_000340_280--Hb_000281_120 Hb_001006_150 Hb_001006_150 Hb_000340_280--Hb_001006_150 Hb_001916_110 Hb_001916_110 Hb_000749_140--Hb_001916_110 Hb_000749_140--Hb_000340_280 Hb_000749_140--Hb_001233_050 Hb_001942_060 Hb_001942_060 Hb_000749_140--Hb_001942_060 Hb_000928_100 Hb_000928_100 Hb_000749_140--Hb_000928_100 Hb_015044_010 Hb_015044_010 Hb_001014_240--Hb_015044_010 Hb_001014_240--Hb_000359_050 Hb_000962_090 Hb_000962_090 Hb_001014_240--Hb_000962_090 Hb_000128_040 Hb_000128_040 Hb_001014_240--Hb_000128_040 Hb_001014_240--Hb_000340_280 Hb_000359_050--Hb_001006_150 Hb_000359_050--Hb_000962_090 Hb_005211_080 Hb_005211_080 Hb_000359_050--Hb_005211_080 Hb_000359_050--Hb_003651_030 Hb_001233_050--Hb_001942_060 Hb_001233_050--Hb_002805_200 Hb_000210_030 Hb_000210_030 Hb_001233_050--Hb_000210_030 Hb_002078_280 Hb_002078_280 Hb_001233_050--Hb_002078_280 Hb_000821_030 Hb_000821_030 Hb_001233_050--Hb_000821_030 Hb_003651_030--Hb_000281_120 Hb_003573_030 Hb_003573_030 Hb_003651_030--Hb_003573_030 Hb_003651_030--Hb_002805_200 Hb_003651_030--Hb_000210_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.31672 27.2276 4.96088 0.0225126 0.0271559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.802457 22.0383

CAGE analysis