Hb_001942_060

Information

Type -
Description -
Location Contig1942: 36118-40246
Sequence    

Annotation

kegg
ID rcu:RCOM_0832830
description hypothetical protein
nr
ID XP_002527035.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SM16
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0832830 PE=4 SV=1
Gene Ontology
ID GO:0047134
description hypothetical protein JCGZ_20930

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001942_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001233_050 0.0353160981 - - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis]
3 Hb_000749_140 0.0730082882 - - PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal [Jatropha curcas]
4 Hb_101133_030 0.0746704303 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
5 Hb_002078_280 0.0758124912 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
6 Hb_000821_030 0.0808278506 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 [Jatropha curcas]
7 Hb_004627_050 0.0828723692 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
8 Hb_002245_050 0.0829270943 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]
9 Hb_002929_030 0.0838206802 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
10 Hb_003750_110 0.0839002238 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]
11 Hb_000836_620 0.0839331179 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
12 Hb_005736_120 0.0841516221 - - PREDICTED: carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic [Gossypium raimondii]
13 Hb_000210_030 0.0872917519 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
14 Hb_002042_090 0.0882750104 - - PREDICTED: root phototropism protein 3-like [Jatropha curcas]
15 Hb_163950_090 0.0886502569 - - PREDICTED: traB domain-containing protein isoform X1 [Jatropha curcas]
16 Hb_000172_660 0.0895142104 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
17 Hb_000262_090 0.0903296968 - - Root phototropism protein, putative [Ricinus communis]
18 Hb_011512_100 0.0904234357 - - PREDICTED: uncharacterized protein LOC105650382 isoform X1 [Jatropha curcas]
19 Hb_002805_200 0.0905757171 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
20 Hb_000084_210 0.0907477746 - - hypothetical protein POPTR_0016s08050g [Populus trichocarpa]

Gene co-expression network

sample Hb_001942_060 Hb_001942_060 Hb_001233_050 Hb_001233_050 Hb_001942_060--Hb_001233_050 Hb_000749_140 Hb_000749_140 Hb_001942_060--Hb_000749_140 Hb_101133_030 Hb_101133_030 Hb_001942_060--Hb_101133_030 Hb_002078_280 Hb_002078_280 Hb_001942_060--Hb_002078_280 Hb_000821_030 Hb_000821_030 Hb_001942_060--Hb_000821_030 Hb_004627_050 Hb_004627_050 Hb_001942_060--Hb_004627_050 Hb_002805_200 Hb_002805_200 Hb_001233_050--Hb_002805_200 Hb_000210_030 Hb_000210_030 Hb_001233_050--Hb_000210_030 Hb_001233_050--Hb_101133_030 Hb_001233_050--Hb_002078_280 Hb_001233_050--Hb_000821_030 Hb_000749_140--Hb_101133_030 Hb_001916_110 Hb_001916_110 Hb_000749_140--Hb_001916_110 Hb_000340_280 Hb_000340_280 Hb_000749_140--Hb_000340_280 Hb_000749_140--Hb_001233_050 Hb_000928_100 Hb_000928_100 Hb_000749_140--Hb_000928_100 Hb_101133_030--Hb_000340_280 Hb_001014_240 Hb_001014_240 Hb_101133_030--Hb_001014_240 Hb_000359_050 Hb_000359_050 Hb_101133_030--Hb_000359_050 Hb_003651_030 Hb_003651_030 Hb_101133_030--Hb_003651_030 Hb_011716_140 Hb_011716_140 Hb_002078_280--Hb_011716_140 Hb_011512_100 Hb_011512_100 Hb_002078_280--Hb_011512_100 Hb_002078_280--Hb_004627_050 Hb_001638_060 Hb_001638_060 Hb_002078_280--Hb_001638_060 Hb_006261_020 Hb_006261_020 Hb_002078_280--Hb_006261_020 Hb_000262_090 Hb_000262_090 Hb_000821_030--Hb_000262_090 Hb_008013_020 Hb_008013_020 Hb_000821_030--Hb_008013_020 Hb_000821_030--Hb_000210_030 Hb_006573_110 Hb_006573_110 Hb_000821_030--Hb_006573_110 Hb_002245_050 Hb_002245_050 Hb_000821_030--Hb_002245_050 Hb_000174_120 Hb_000174_120 Hb_000821_030--Hb_000174_120 Hb_004627_050--Hb_011512_100 Hb_002259_020 Hb_002259_020 Hb_004627_050--Hb_002259_020 Hb_000172_660 Hb_000172_660 Hb_004627_050--Hb_000172_660 Hb_004627_050--Hb_002245_050 Hb_002929_030 Hb_002929_030 Hb_004627_050--Hb_002929_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0135197 0.520962 0.0921899 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00971633 0.305683

CAGE analysis