Hb_000359_050

Information

Type -
Description -
Location Contig359: 81238-83244
Sequence    

Annotation

kegg
ID rcu:RCOM_0536130
description Oxygen-evolving enhancer protein 2, chloroplast precursor, putative (EC:1.3.1.74)
nr
ID XP_002521576.1
description Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9SLQ8
description Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis sativus GN=PSBP PE=2 SV=1
trembl
ID B9S6F7
description Oxygen-evolving enhancer protein 2, chloroplast, putative OS=Ricinus communis GN=RCOM_0536130 PE=4 SV=1
Gene Ontology
ID GO:0009654
description oxygen-evolving enhancer protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37025: 80765-81180 , PASA_asmbl_37026: 81223-83213 , PASA_asmbl_37027: 81586-81781 , PASA_asmbl_37028: 82163-82945 , PASA_asmbl_37029: 82765-82945
cDNA
(Sanger)
(ID:Location)		 001_L02.ab1: 81289-82955 , 001_O14.ab1: 81314-82948 , 002_C12.ab1: 81303-82921 , 005_A23.ab1: 81289-82873 , 005_D15.ab1: 81297-82921 , 005_L12.ab1: 81260-82914 , 007_J10.ab1: 81289-82921 , 008_B08.ab1: 81294-82881 , 008_M13.ab1: 81289-81547 , 011_N20.ab1: 81289-82921 , 014_L21.ab1: 81287-82951 , 017_K06.ab1: 81277-82154 , 017_P12.ab1: 82891-83094 , 018_D20.ab1: 81314-82856 , 021_F10.ab1: 81294-82861 , 025_M02.ab1: 81289-82938 , 026_B07.ab1: 81314-82797 , 028_N19.ab1: 81287-82877 , 031_N02.ab1: 81314-82940 , 036_G01.ab1: 81270-82907 , 036_O14.ab1: 81289-82909 , 037_B17.ab1: 81314-82942 , 039_P17.ab1: 81289-82921 , 040_A04.ab1: 81260-82944 , 042_E22.ab1: 81314-82918 , 043_D03.ab1: 81308-82944 , 043_I14.ab1: 81300-82168 , 047_J07.ab1: 81280-82914 , 047_P12.ab1: 81270-82877 , 051_C04.ab1: 81314-81940 , 052_C24.ab1: 81314-82921 , 052_M05.ab1: 81289-82907 , 053_C22.ab1: 81287-82917

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000359_050 0.0 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
2 Hb_001006_150 0.0452540954 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
3 Hb_000962_090 0.0458143798 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
4 Hb_000340_280 0.0462563184 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005211_080 0.0496643047 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
6 Hb_001014_240 0.0502948954 - - PREDICTED: protein NRT1/ PTR FAMILY 6.1 [Jatropha curcas]
7 Hb_003651_030 0.0587776253 - - lyase, putative [Ricinus communis]
8 Hb_078954_030 0.0627386285 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000281_120 0.0627453915 - - protein binding protein, putative [Ricinus communis]
10 Hb_001424_010 0.0629815135 - - serine/threonine protein kinase, putative [Ricinus communis]
11 Hb_000445_270 0.0630161363 - - ATP binding protein, putative [Ricinus communis]
12 Hb_101133_030 0.0642755964 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
13 Hb_005329_010 0.0674686725 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
14 Hb_001343_030 0.0681296128 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
15 Hb_002805_200 0.0701653875 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
16 Hb_001338_120 0.0705776092 - - hypothetical chloroplast RF68 (chloroplast) [Ipomoea batatas]
17 Hb_001975_120 0.0747023975 - - chlorophyll a/b binding protein type II [Glycine max]
18 Hb_000530_040 0.0748049627 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 [Jatropha curcas]
19 Hb_001864_050 0.0750841439 - - chloroplast oxygen-evolving enhancer protein [Manihot esculenta]
20 Hb_000128_040 0.0775016276 - - PREDICTED: uncharacterized protein LOC105641228 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000359_050 Hb_000359_050 Hb_001006_150 Hb_001006_150 Hb_000359_050--Hb_001006_150 Hb_000962_090 Hb_000962_090 Hb_000359_050--Hb_000962_090 Hb_000340_280 Hb_000340_280 Hb_000359_050--Hb_000340_280 Hb_005211_080 Hb_005211_080 Hb_000359_050--Hb_005211_080 Hb_001014_240 Hb_001014_240 Hb_000359_050--Hb_001014_240 Hb_003651_030 Hb_003651_030 Hb_000359_050--Hb_003651_030 Hb_001006_150--Hb_005211_080 Hb_000445_270 Hb_000445_270 Hb_001006_150--Hb_000445_270 Hb_001766_160 Hb_001766_160 Hb_001006_150--Hb_001766_160 Hb_001006_150--Hb_000340_280 Hb_001338_120 Hb_001338_120 Hb_001006_150--Hb_001338_120 Hb_000962_090--Hb_005211_080 Hb_001343_030 Hb_001343_030 Hb_000962_090--Hb_001343_030 Hb_000962_090--Hb_001014_240 Hb_005329_010 Hb_005329_010 Hb_000962_090--Hb_005329_010 Hb_000962_090--Hb_001006_150 Hb_002805_200 Hb_002805_200 Hb_000340_280--Hb_002805_200 Hb_101133_030 Hb_101133_030 Hb_000340_280--Hb_101133_030 Hb_000340_280--Hb_003651_030 Hb_000281_120 Hb_000281_120 Hb_000340_280--Hb_000281_120 Hb_005211_080--Hb_005329_010 Hb_004306_090 Hb_004306_090 Hb_005211_080--Hb_004306_090 Hb_005211_080--Hb_001766_160 Hb_015044_010 Hb_015044_010 Hb_001014_240--Hb_015044_010 Hb_000128_040 Hb_000128_040 Hb_001014_240--Hb_000128_040 Hb_001014_240--Hb_101133_030 Hb_001014_240--Hb_000340_280 Hb_003651_030--Hb_000281_120 Hb_003573_030 Hb_003573_030 Hb_003651_030--Hb_003573_030 Hb_003651_030--Hb_002805_200 Hb_000210_030 Hb_000210_030 Hb_003651_030--Hb_000210_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.676368 145.973 1637.66 397.657 0.27411 0.480608
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.28894 1.56707 0.371438 35.9138 1525.57

CAGE analysis