Hb_001338_120

Information

Type -
Description -
Location Contig1338: 127380-131470
Sequence    

Annotation

kegg
ID mtr:MTR_3g035640
description Ycf68 protein
nr
ID YP_009128439.1
description hypothetical chloroplast RF68 (chloroplast) [Ipomoea batatas]
swissprot
ID P12173
description Uncharacterized protein ycf68 OS=Oryza sativa subsp. japonica GN=ycf68-1 PE=3 SV=1
trembl
ID A0A0C5GFT8
description Ycf68 protein OS=Ipomoea batatas GN=ycf68 PE=4 SV=1
Gene Ontology
ID GO:0009507
description hypothetical chloroplast rf68

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001338_120 0.0 - - hypothetical chloroplast RF68 (chloroplast) [Ipomoea batatas]
2 Hb_001864_050 0.0576282236 - - chloroplast oxygen-evolving enhancer protein [Manihot esculenta]
3 Hb_001006_150 0.0611173471 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
4 Hb_005329_010 0.0663987388 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
5 Hb_000359_050 0.0705776092 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
6 Hb_000281_120 0.0733167303 - - protein binding protein, putative [Ricinus communis]
7 Hb_000445_270 0.0735499409 - - ATP binding protein, putative [Ricinus communis]
8 Hb_003651_030 0.0742294746 - - lyase, putative [Ricinus communis]
9 Hb_005211_080 0.0780277703 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
10 Hb_078954_030 0.0782464239 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000962_090 0.0791158053 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
12 Hb_005527_070 0.0803839213 - - short-chain dehydrogenase/reductase family protein [Populus trichocarpa]
13 Hb_000088_230 0.0812310926 - - hypothetical protein POPTR_0013s11340g [Populus trichocarpa]
14 Hb_000482_160 0.0812785262 - - hypothetical protein JCGZ_07670 [Jatropha curcas]
15 Hb_001424_010 0.0819160879 - - serine/threonine protein kinase, putative [Ricinus communis]
16 Hb_004306_090 0.0826656966 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
17 Hb_000340_280 0.0840225678 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002805_200 0.0847860625 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
19 Hb_001322_120 0.0892004045 - - nutrient reservoir, putative [Ricinus communis]
20 Hb_002529_120 0.0911160193 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]

Gene co-expression network

sample Hb_001338_120 Hb_001338_120 Hb_001864_050 Hb_001864_050 Hb_001338_120--Hb_001864_050 Hb_001006_150 Hb_001006_150 Hb_001338_120--Hb_001006_150 Hb_005329_010 Hb_005329_010 Hb_001338_120--Hb_005329_010 Hb_000359_050 Hb_000359_050 Hb_001338_120--Hb_000359_050 Hb_000281_120 Hb_000281_120 Hb_001338_120--Hb_000281_120 Hb_000445_270 Hb_000445_270 Hb_001338_120--Hb_000445_270 Hb_002805_200 Hb_002805_200 Hb_001864_050--Hb_002805_200 Hb_001864_050--Hb_001006_150 Hb_000482_160 Hb_000482_160 Hb_001864_050--Hb_000482_160 Hb_001864_050--Hb_000281_120 Hb_005305_140 Hb_005305_140 Hb_001864_050--Hb_005305_140 Hb_001006_150--Hb_000359_050 Hb_005211_080 Hb_005211_080 Hb_001006_150--Hb_005211_080 Hb_001006_150--Hb_000445_270 Hb_001766_160 Hb_001766_160 Hb_001006_150--Hb_001766_160 Hb_000340_280 Hb_000340_280 Hb_001006_150--Hb_000340_280 Hb_005329_010--Hb_005211_080 Hb_005329_010--Hb_001766_160 Hb_000088_230 Hb_000088_230 Hb_005329_010--Hb_000088_230 Hb_005329_010--Hb_001006_150 Hb_001322_120 Hb_001322_120 Hb_005329_010--Hb_001322_120 Hb_000460_040 Hb_000460_040 Hb_005329_010--Hb_000460_040 Hb_000962_090 Hb_000962_090 Hb_000359_050--Hb_000962_090 Hb_000359_050--Hb_000340_280 Hb_000359_050--Hb_005211_080 Hb_001014_240 Hb_001014_240 Hb_000359_050--Hb_001014_240 Hb_003651_030 Hb_003651_030 Hb_000359_050--Hb_003651_030 Hb_000281_120--Hb_003651_030 Hb_003573_030 Hb_003573_030 Hb_000281_120--Hb_003573_030 Hb_000281_120--Hb_002805_200 Hb_000210_030 Hb_000210_030 Hb_000281_120--Hb_000210_030 Hb_000281_120--Hb_000340_280 Hb_003921_020 Hb_003921_020 Hb_000281_120--Hb_003921_020 Hb_080922_010 Hb_080922_010 Hb_000445_270--Hb_080922_010 Hb_005649_060 Hb_005649_060 Hb_000445_270--Hb_005649_060 Hb_000445_270--Hb_000359_050 Hb_000445_270--Hb_005329_010 Hb_000445_270--Hb_001864_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.363334 5.99798 57.5736 12.7875 0.202753 0.287503
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.349878 57.6733

CAGE analysis