Hb_000460_040

Information

Type -
Description -
Location Contig460: 62128-71743
Sequence    

Annotation

kegg
ID rcu:RCOM_0335320
description protein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_012080779.1
description PREDICTED: protein phosphatase 2C 57 [Jatropha curcas]
swissprot
ID P49599
description Protein phosphatase 2C 57 OS=Arabidopsis thaliana GN=PPH1 PE=2 SV=2
trembl
ID A0A067LE79
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18183 PE=3 SV=1
Gene Ontology
ID GO:0005730
description protein phosphatase 2c 57

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43678: 70399-71915
cDNA
(Sanger)
(ID:Location)		 047_B04.ab1: 70399-71915

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000460_040 0.0 - - PREDICTED: protein phosphatase 2C 57 [Jatropha curcas]
2 Hb_000088_230 0.060828595 - - hypothetical protein POPTR_0013s11340g [Populus trichocarpa]
3 Hb_005329_010 0.064589262 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
4 Hb_001699_140 0.069619307 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
5 Hb_007477_060 0.0726395946 - - unknown [Medicago truncatula]
6 Hb_003494_090 0.0726499878 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
7 Hb_005211_080 0.0729985729 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
8 Hb_002368_060 0.0759675158 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006570_030 0.0760860958 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
10 Hb_002272_210 0.0762932458 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
11 Hb_007597_030 0.0763808311 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_004306_090 0.0764782168 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
13 Hb_002852_010 0.0765133869 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
14 Hb_002007_220 0.0781824087 - - PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]
15 Hb_001322_120 0.0790425908 - - nutrient reservoir, putative [Ricinus communis]
16 Hb_001159_050 0.079886244 - - PREDICTED: uncharacterized protein LOC105645952 [Jatropha curcas]
17 Hb_001766_160 0.0805144681 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
18 Hb_002871_180 0.0812178792 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
19 Hb_005433_020 0.0821198714 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
20 Hb_005063_030 0.0845918314 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000460_040 Hb_000460_040 Hb_000088_230 Hb_000088_230 Hb_000460_040--Hb_000088_230 Hb_005329_010 Hb_005329_010 Hb_000460_040--Hb_005329_010 Hb_001699_140 Hb_001699_140 Hb_000460_040--Hb_001699_140 Hb_007477_060 Hb_007477_060 Hb_000460_040--Hb_007477_060 Hb_003494_090 Hb_003494_090 Hb_000460_040--Hb_003494_090 Hb_005211_080 Hb_005211_080 Hb_000460_040--Hb_005211_080 Hb_001322_120 Hb_001322_120 Hb_000088_230--Hb_001322_120 Hb_000088_230--Hb_005329_010 Hb_002871_180 Hb_002871_180 Hb_000088_230--Hb_002871_180 Hb_002529_120 Hb_002529_120 Hb_000088_230--Hb_002529_120 Hb_001006_150 Hb_001006_150 Hb_000088_230--Hb_001006_150 Hb_005329_010--Hb_005211_080 Hb_001766_160 Hb_001766_160 Hb_005329_010--Hb_001766_160 Hb_005329_010--Hb_001006_150 Hb_005329_010--Hb_001322_120 Hb_000101_330 Hb_000101_330 Hb_001699_140--Hb_000101_330 Hb_001699_140--Hb_007477_060 Hb_005305_070 Hb_005305_070 Hb_001699_140--Hb_005305_070 Hb_000270_090 Hb_000270_090 Hb_001699_140--Hb_000270_090 Hb_005054_120 Hb_005054_120 Hb_001699_140--Hb_005054_120 Hb_007477_060--Hb_000101_330 Hb_007477_060--Hb_002871_180 Hb_006570_030 Hb_006570_030 Hb_007477_060--Hb_006570_030 Hb_007477_060--Hb_001766_160 Hb_003536_020 Hb_003536_020 Hb_007477_060--Hb_003536_020 Hb_007477_060--Hb_001322_120 Hb_002007_220 Hb_002007_220 Hb_003494_090--Hb_002007_220 Hb_002852_010 Hb_002852_010 Hb_003494_090--Hb_002852_010 Hb_003494_090--Hb_005329_010 Hb_033363_040 Hb_033363_040 Hb_003494_090--Hb_033363_040 Hb_018591_020 Hb_018591_020 Hb_003494_090--Hb_018591_020 Hb_000962_090 Hb_000962_090 Hb_005211_080--Hb_000962_090 Hb_000359_050 Hb_000359_050 Hb_005211_080--Hb_000359_050 Hb_005211_080--Hb_001006_150 Hb_004306_090 Hb_004306_090 Hb_005211_080--Hb_004306_090 Hb_005211_080--Hb_001766_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0839324 9.81187 52.3698 20.7895 0.016827 0.133962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.344847 0.0904239 0.0562047 0.530809 74.7368

CAGE analysis