Hb_000270_090

Information

Type -
Description -
Location Contig270: 63955-66381
Sequence    

Annotation

kegg
ID rcu:RCOM_1513380
description nitrate transporter, putative
nr
ID XP_002511509.1
description nitrate transporter, putative [Ricinus communis]
swissprot
ID Q9LV10
description Protein NRT1/ PTR FAMILY 2.11 OS=Arabidopsis thaliana GN=NPF2.11 PE=1 SV=1
trembl
ID B9R934
description Nitrate transporter, putative OS=Ricinus communis GN=RCOM_1513380 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28161: 63980-66294
cDNA
(Sanger)
(ID:Location)		 042_J19.ab1: 63980-64953

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_090 0.0 - - nitrate transporter, putative [Ricinus communis]
2 Hb_001321_010 0.0354122285 - - HIGH-CHLOROPHYLL-FLUORESCENCE 101 family protein [Populus trichocarpa]
3 Hb_004994_030 0.0467182893 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
4 Hb_011104_020 0.0629571475 - - PREDICTED: ABC transporter B family member 2-like [Jatropha curcas]
5 Hb_001699_140 0.0684011483 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
6 Hb_002007_220 0.0686991871 - - PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]
7 Hb_002407_090 0.0758247818 - - hypothetical protein JCGZ_00747 [Jatropha curcas]
8 Hb_000155_020 0.0763490363 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_003937_010 0.0772470319 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
10 Hb_018591_020 0.0808435064 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
11 Hb_004017_030 0.0820517873 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]
12 Hb_080922_010 0.0867992831 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
13 Hb_000705_010 0.0884221751 - - hypothetical protein CICLE_v10027296mg [Citrus clementina]
14 Hb_002073_150 0.0891853563 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
15 Hb_007718_030 0.0892141349 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
16 Hb_003494_090 0.0909670816 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
17 Hb_063405_010 0.0912273587 - - PREDICTED: probable terpene synthase 3 [Jatropha curcas]
18 Hb_010136_010 0.0916832486 - - Putative receptor-like protein kinase [Glycine soja]
19 Hb_012389_010 0.0928358664 - - hypothetical protein POPTR_0018s11820g [Populus trichocarpa]
20 Hb_000608_290 0.0947629533 - - thioredoxin f-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000270_090 Hb_000270_090 Hb_001321_010 Hb_001321_010 Hb_000270_090--Hb_001321_010 Hb_004994_030 Hb_004994_030 Hb_000270_090--Hb_004994_030 Hb_011104_020 Hb_011104_020 Hb_000270_090--Hb_011104_020 Hb_001699_140 Hb_001699_140 Hb_000270_090--Hb_001699_140 Hb_002007_220 Hb_002007_220 Hb_000270_090--Hb_002007_220 Hb_002407_090 Hb_002407_090 Hb_000270_090--Hb_002407_090 Hb_001321_010--Hb_004994_030 Hb_001321_010--Hb_011104_020 Hb_001321_010--Hb_002007_220 Hb_018591_020 Hb_018591_020 Hb_001321_010--Hb_018591_020 Hb_001321_010--Hb_002407_090 Hb_003937_010 Hb_003937_010 Hb_004994_030--Hb_003937_010 Hb_004994_030--Hb_011104_020 Hb_012389_010 Hb_012389_010 Hb_004994_030--Hb_012389_010 Hb_002073_150 Hb_002073_150 Hb_004994_030--Hb_002073_150 Hb_011104_020--Hb_002073_150 Hb_000483_430 Hb_000483_430 Hb_011104_020--Hb_000483_430 Hb_011104_020--Hb_012389_010 Hb_000101_330 Hb_000101_330 Hb_001699_140--Hb_000101_330 Hb_007477_060 Hb_007477_060 Hb_001699_140--Hb_007477_060 Hb_005305_070 Hb_005305_070 Hb_001699_140--Hb_005305_070 Hb_005054_120 Hb_005054_120 Hb_001699_140--Hb_005054_120 Hb_000460_040 Hb_000460_040 Hb_001699_140--Hb_000460_040 Hb_002007_220--Hb_018591_020 Hb_000155_020 Hb_000155_020 Hb_002007_220--Hb_000155_020 Hb_033363_040 Hb_033363_040 Hb_002007_220--Hb_033363_040 Hb_003494_090 Hb_003494_090 Hb_002007_220--Hb_003494_090 Hb_046739_010 Hb_046739_010 Hb_002407_090--Hb_046739_010 Hb_000608_290 Hb_000608_290 Hb_002407_090--Hb_000608_290 Hb_011028_030 Hb_011028_030 Hb_002407_090--Hb_011028_030 Hb_002407_090--Hb_011104_020 Hb_000373_010 Hb_000373_010 Hb_002407_090--Hb_000373_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 9.31224 39.9818 16.7791 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0208777 0.0164276 0 2.95873 54.0237

CAGE analysis