Hb_011028_030

Information

Type -
Description -
Location Contig11028: 18123-27768
Sequence    

Annotation

kegg
ID rcu:RCOM_1579670
description hypothetical protein
nr
ID XP_002513560.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RIJ1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1579670 PE=4 SV=1
Gene Ontology
ID GO:0030247
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03195: 27188-27671
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011028_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002155_020 0.0603889814 - - PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
3 Hb_046739_010 0.0666879403 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
4 Hb_000373_010 0.0679053473 - - ATP binding protein, putative [Ricinus communis]
5 Hb_002407_090 0.0726237899 - - hypothetical protein JCGZ_00747 [Jatropha curcas]
6 Hb_000031_320 0.0848776754 - - unnamed protein product [Vitis vinifera]
7 Hb_000644_010 0.0862794044 - - PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
8 Hb_003643_080 0.0864710265 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
9 Hb_033363_030 0.0872363915 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Jatropha curcas]
10 Hb_096224_050 0.0897564166 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
11 Hb_019863_050 0.0906655069 - - PREDICTED: uncharacterized protein LOC103343426 [Prunus mume]
12 Hb_002211_020 0.0984179922 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
13 Hb_004979_080 0.1008618729 - - kinase, putative [Ricinus communis]
14 Hb_000680_130 0.111199618 - - beta-galactosidase, putative [Ricinus communis]
15 Hb_004880_050 0.1154572072 - - conserved hypothetical protein [Ricinus communis]
16 Hb_186844_010 0.1164816231 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
17 Hb_000027_110 0.1176098173 - - wall-associated kinase, putative [Ricinus communis]
18 Hb_000608_290 0.1177389454 - - thioredoxin f-type, putative [Ricinus communis]
19 Hb_003970_010 0.1205836125 - - PREDICTED: sigma factor binding protein 1, chloroplastic-like [Populus euphratica]
20 Hb_007718_030 0.12192249 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_011028_030 Hb_011028_030 Hb_002155_020 Hb_002155_020 Hb_011028_030--Hb_002155_020 Hb_046739_010 Hb_046739_010 Hb_011028_030--Hb_046739_010 Hb_000373_010 Hb_000373_010 Hb_011028_030--Hb_000373_010 Hb_002407_090 Hb_002407_090 Hb_011028_030--Hb_002407_090 Hb_000031_320 Hb_000031_320 Hb_011028_030--Hb_000031_320 Hb_000644_010 Hb_000644_010 Hb_011028_030--Hb_000644_010 Hb_002155_020--Hb_000373_010 Hb_003643_080 Hb_003643_080 Hb_002155_020--Hb_003643_080 Hb_002155_020--Hb_000644_010 Hb_000680_130 Hb_000680_130 Hb_002155_020--Hb_000680_130 Hb_002155_020--Hb_002407_090 Hb_046739_010--Hb_000031_320 Hb_046739_010--Hb_002407_090 Hb_033363_030 Hb_033363_030 Hb_046739_010--Hb_033363_030 Hb_002010_030 Hb_002010_030 Hb_046739_010--Hb_002010_030 Hb_096224_050 Hb_096224_050 Hb_046739_010--Hb_096224_050 Hb_000373_010--Hb_000644_010 Hb_000373_010--Hb_000680_130 Hb_000373_010--Hb_002407_090 Hb_000373_010--Hb_096224_050 Hb_000608_290 Hb_000608_290 Hb_002407_090--Hb_000608_290 Hb_011104_020 Hb_011104_020 Hb_002407_090--Hb_011104_020 Hb_000270_090 Hb_000270_090 Hb_002407_090--Hb_000270_090 Hb_001677_170 Hb_001677_170 Hb_000031_320--Hb_001677_170 Hb_000031_320--Hb_002407_090 Hb_002818_160 Hb_002818_160 Hb_000031_320--Hb_002818_160 Hb_003970_010 Hb_003970_010 Hb_000031_320--Hb_003970_010 Hb_000644_010--Hb_003643_080 Hb_000644_010--Hb_096224_050 Hb_004979_080 Hb_004979_080 Hb_000644_010--Hb_004979_080 Hb_000027_110 Hb_000027_110 Hb_000644_010--Hb_000027_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.11664 1.53133 0.830452 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.218475 2.73977

CAGE analysis