Hb_003643_080

Information

Type -
Description -
Location Contig3643: 79377-82753
Sequence    

Annotation

kegg
ID fve:101295091
description probable LRR receptor-like serine/threonine-protein kinase At3g47570-like
nr
ID KDP44808.1
description hypothetical protein JCGZ_01308 [Jatropha curcas]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A067LC70
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01308 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003643_080 0.0 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
2 Hb_000644_010 0.0566551447 - - PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
3 Hb_002155_020 0.071956807 - - PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
4 Hb_011028_030 0.0864710265 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000574_340 0.0927113626 - - hypothetical protein RCOM_0901420 [Ricinus communis]
6 Hb_004979_080 0.0953101028 - - kinase, putative [Ricinus communis]
7 Hb_000373_010 0.0999077705 - - ATP binding protein, putative [Ricinus communis]
8 Hb_000027_110 0.1008205432 - - wall-associated kinase, putative [Ricinus communis]
9 Hb_096224_050 0.1072987959 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
10 Hb_033363_030 0.1149168876 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Jatropha curcas]
11 Hb_000668_180 0.1196443448 - - hypothetical protein POPTR_0005s16490g [Populus trichocarpa]
12 Hb_027337_130 0.1247871095 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
13 Hb_004291_050 0.1253270385 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
14 Hb_019863_050 0.1254137165 - - PREDICTED: uncharacterized protein LOC103343426 [Prunus mume]
15 Hb_046739_010 0.1264021802 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
16 Hb_005092_090 0.1294055345 - - cold regulated protein [Manihot esculenta]
17 Hb_006588_020 0.1317374734 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
18 Hb_003440_080 0.1321890081 - - polyprotein [Citrus endogenous pararetrovirus]
19 Hb_022693_080 0.1349559698 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
20 Hb_000680_130 0.1353242523 - - beta-galactosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003643_080 Hb_003643_080 Hb_000644_010 Hb_000644_010 Hb_003643_080--Hb_000644_010 Hb_002155_020 Hb_002155_020 Hb_003643_080--Hb_002155_020 Hb_011028_030 Hb_011028_030 Hb_003643_080--Hb_011028_030 Hb_000574_340 Hb_000574_340 Hb_003643_080--Hb_000574_340 Hb_004979_080 Hb_004979_080 Hb_003643_080--Hb_004979_080 Hb_000373_010 Hb_000373_010 Hb_003643_080--Hb_000373_010 Hb_096224_050 Hb_096224_050 Hb_000644_010--Hb_096224_050 Hb_000644_010--Hb_000373_010 Hb_000644_010--Hb_004979_080 Hb_000027_110 Hb_000027_110 Hb_000644_010--Hb_000027_110 Hb_000644_010--Hb_002155_020 Hb_002155_020--Hb_011028_030 Hb_002155_020--Hb_000373_010 Hb_000680_130 Hb_000680_130 Hb_002155_020--Hb_000680_130 Hb_002407_090 Hb_002407_090 Hb_002155_020--Hb_002407_090 Hb_046739_010 Hb_046739_010 Hb_011028_030--Hb_046739_010 Hb_011028_030--Hb_000373_010 Hb_011028_030--Hb_002407_090 Hb_000031_320 Hb_000031_320 Hb_011028_030--Hb_000031_320 Hb_011028_030--Hb_000644_010 Hb_003440_080 Hb_003440_080 Hb_000574_340--Hb_003440_080 Hb_012796_030 Hb_012796_030 Hb_000574_340--Hb_012796_030 Hb_027337_130 Hb_027337_130 Hb_000574_340--Hb_027337_130 Hb_005092_090 Hb_005092_090 Hb_000574_340--Hb_005092_090 Hb_188075_010 Hb_188075_010 Hb_000574_340--Hb_188075_010 Hb_004979_080--Hb_096224_050 Hb_004979_070 Hb_004979_070 Hb_004979_080--Hb_004979_070 Hb_033363_030 Hb_033363_030 Hb_004979_080--Hb_033363_030 Hb_007904_110 Hb_007904_110 Hb_004979_080--Hb_007904_110 Hb_000668_180 Hb_000668_180 Hb_004979_080--Hb_000668_180 Hb_000373_010--Hb_000680_130 Hb_000373_010--Hb_002407_090 Hb_000373_010--Hb_096224_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.426274 0.47116 0.220448 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.122387 1.22364

CAGE analysis