Hb_188075_010

Information

Type -
Description -
Location Contig188075: 1-741
Sequence    

Annotation

kegg
ID tcc:TCM_009998
description DNA/RNA polymerases superfamily protein
nr
ID XP_012453109.1
description PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NNN8
description Endogenous retrovirus group K, member 6 OS=Gossypium arboreum GN=F383_04282 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188075_010 0.0 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
2 Hb_027337_130 0.0811176388 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
3 Hb_001652_130 0.0852635012 - - hypothetical protein B456_002G193900 [Gossypium raimondii]
4 Hb_008461_070 0.0908902486 - - PREDICTED: ethylene-overproduction protein 1 isoform X1 [Jatropha curcas]
5 Hb_001345_040 0.0927527557 - - hypothetical protein VITISV_015004 [Vitis vinifera]
6 Hb_000574_340 0.0983614801 - - hypothetical protein RCOM_0901420 [Ricinus communis]
7 Hb_000033_010 0.1101823508 - - Protein MLO, putative [Ricinus communis]
8 Hb_006588_020 0.110276848 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
9 Hb_006787_070 0.1134330065 - - PREDICTED: uncharacterized protein LOC104121706, partial [Nicotiana tomentosiformis]
10 Hb_125961_010 0.1170217842 - - ATP binding protein, putative [Ricinus communis]
11 Hb_003142_080 0.1193628434 - - receptor serine/threonine kinase, putative [Ricinus communis]
12 Hb_007035_010 0.1208412787 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
13 Hb_185474_020 0.1211366301 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
14 Hb_002615_080 0.12333067 - - PREDICTED: non-specific phospholipase C2 [Jatropha curcas]
15 Hb_004312_020 0.1233365408 - - conserved hypothetical protein [Ricinus communis]
16 Hb_162676_010 0.1277219277 - - ATP binding protein, putative [Ricinus communis]
17 Hb_012796_030 0.1294193894 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
18 Hb_003440_080 0.1324429158 - - polyprotein [Citrus endogenous pararetrovirus]
19 Hb_005092_090 0.1327187641 - - cold regulated protein [Manihot esculenta]
20 Hb_002636_070 0.1332380803 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]

Gene co-expression network

sample Hb_188075_010 Hb_188075_010 Hb_027337_130 Hb_027337_130 Hb_188075_010--Hb_027337_130 Hb_001652_130 Hb_001652_130 Hb_188075_010--Hb_001652_130 Hb_008461_070 Hb_008461_070 Hb_188075_010--Hb_008461_070 Hb_001345_040 Hb_001345_040 Hb_188075_010--Hb_001345_040 Hb_000574_340 Hb_000574_340 Hb_188075_010--Hb_000574_340 Hb_000033_010 Hb_000033_010 Hb_188075_010--Hb_000033_010 Hb_002636_070 Hb_002636_070 Hb_027337_130--Hb_002636_070 Hb_027337_130--Hb_000574_340 Hb_004291_050 Hb_004291_050 Hb_027337_130--Hb_004291_050 Hb_027337_130--Hb_008461_070 Hb_027337_130--Hb_000033_010 Hb_185474_020 Hb_185474_020 Hb_001652_130--Hb_185474_020 Hb_001652_130--Hb_000033_010 Hb_006198_040 Hb_006198_040 Hb_001652_130--Hb_006198_040 Hb_003142_080 Hb_003142_080 Hb_001652_130--Hb_003142_080 Hb_002943_020 Hb_002943_020 Hb_001652_130--Hb_002943_020 Hb_125961_010 Hb_125961_010 Hb_008461_070--Hb_125961_010 Hb_162676_010 Hb_162676_010 Hb_008461_070--Hb_162676_010 Hb_003226_230 Hb_003226_230 Hb_008461_070--Hb_003226_230 Hb_008461_070--Hb_002636_070 Hb_006588_020 Hb_006588_020 Hb_001345_040--Hb_006588_020 Hb_005092_090 Hb_005092_090 Hb_001345_040--Hb_005092_090 Hb_000352_060 Hb_000352_060 Hb_001345_040--Hb_000352_060 Hb_004312_020 Hb_004312_020 Hb_001345_040--Hb_004312_020 Hb_006787_070 Hb_006787_070 Hb_001345_040--Hb_006787_070 Hb_003440_080 Hb_003440_080 Hb_000574_340--Hb_003440_080 Hb_003643_080 Hb_003643_080 Hb_000574_340--Hb_003643_080 Hb_012796_030 Hb_012796_030 Hb_000574_340--Hb_012796_030 Hb_000574_340--Hb_005092_090 Hb_000033_010--Hb_006198_040 Hb_000033_010--Hb_003142_080 Hb_000033_010--Hb_002636_070 Hb_004724_260 Hb_004724_260 Hb_000033_010--Hb_004724_260 Hb_029223_010 Hb_029223_010 Hb_000033_010--Hb_029223_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0545424 0.0489846 0.0593381 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0477464 0.23421

CAGE analysis