Hb_162676_010

Information

Type -
Description -
Location Contig162676: 71-1381
Sequence    

Annotation

kegg
ID rcu:RCOM_0694460
description ATP binding protein, putative (EC:2.7.10.2)
nr
ID XP_002522182.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9FLW0
description Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana GN=At5g24010 PE=1 SV=1
trembl
ID B9S863
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0694460 PE=3 SV=1
Gene Ontology
ID GO:0016772
description probable receptor-like protein kinase at5g24010

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162676_010 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_003226_230 0.0338066371 - - PREDICTED: transposon Ty3-G Gag-Pol polyprotein [Phoenix dactylifera]
3 Hb_125961_010 0.0509812578 - - ATP binding protein, putative [Ricinus communis]
4 Hb_000120_480 0.0666924027 - - -
5 Hb_005057_030 0.0892809784 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
6 Hb_014700_030 0.0927565758 - - tryptophan synthase beta chain, putative [Ricinus communis]
7 Hb_008461_070 0.0930417671 - - PREDICTED: ethylene-overproduction protein 1 isoform X1 [Jatropha curcas]
8 Hb_002713_060 0.0971907326 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
9 Hb_066293_010 0.0973157569 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
10 Hb_005723_090 0.0998301345 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002636_070 0.1016240459 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
12 Hb_032779_010 0.1081502773 - - unnamed protein product [Vitis vinifera]
13 Hb_010222_060 0.1097163647 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_027337_130 0.1116858842 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
15 Hb_000680_130 0.1125099681 - - beta-galactosidase, putative [Ricinus communis]
16 Hb_000574_340 0.1158429455 - - hypothetical protein RCOM_0901420 [Ricinus communis]
17 Hb_173387_010 0.1213325783 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
18 Hb_000427_040 0.1234703567 - - Gibberellin receptor GID1, putative [Ricinus communis]
19 Hb_004979_080 0.1235102037 - - kinase, putative [Ricinus communis]
20 Hb_009522_020 0.1235739612 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]

Gene co-expression network

sample Hb_162676_010 Hb_162676_010 Hb_003226_230 Hb_003226_230 Hb_162676_010--Hb_003226_230 Hb_125961_010 Hb_125961_010 Hb_162676_010--Hb_125961_010 Hb_000120_480 Hb_000120_480 Hb_162676_010--Hb_000120_480 Hb_005057_030 Hb_005057_030 Hb_162676_010--Hb_005057_030 Hb_014700_030 Hb_014700_030 Hb_162676_010--Hb_014700_030 Hb_008461_070 Hb_008461_070 Hb_162676_010--Hb_008461_070 Hb_003226_230--Hb_125961_010 Hb_003226_230--Hb_000120_480 Hb_003226_230--Hb_005057_030 Hb_005723_090 Hb_005723_090 Hb_003226_230--Hb_005723_090 Hb_066293_010 Hb_066293_010 Hb_003226_230--Hb_066293_010 Hb_125961_010--Hb_000120_480 Hb_125961_010--Hb_005057_030 Hb_125961_010--Hb_008461_070 Hb_125961_010--Hb_066293_010 Hb_000120_480--Hb_005723_090 Hb_001158_250 Hb_001158_250 Hb_000120_480--Hb_001158_250 Hb_000120_480--Hb_005057_030 Hb_005057_030--Hb_005723_090 Hb_005183_100 Hb_005183_100 Hb_005057_030--Hb_005183_100 Hb_002713_060 Hb_002713_060 Hb_005057_030--Hb_002713_060 Hb_001789_120 Hb_001789_120 Hb_014700_030--Hb_001789_120 Hb_004880_050 Hb_004880_050 Hb_014700_030--Hb_004880_050 Hb_010222_060 Hb_010222_060 Hb_014700_030--Hb_010222_060 Hb_032779_010 Hb_032779_010 Hb_014700_030--Hb_032779_010 Hb_013394_120 Hb_013394_120 Hb_014700_030--Hb_013394_120 Hb_132840_170 Hb_132840_170 Hb_014700_030--Hb_132840_170 Hb_188075_010 Hb_188075_010 Hb_008461_070--Hb_188075_010 Hb_027337_130 Hb_027337_130 Hb_008461_070--Hb_027337_130 Hb_008461_070--Hb_003226_230 Hb_002636_070 Hb_002636_070 Hb_008461_070--Hb_002636_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.40847 2.7056 4.42112 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.188 9.5602

CAGE analysis