Hb_008461_070

Information

Type -
Description -
Location Contig8461: 97114-102092
Sequence    

Annotation

kegg
ID rcu:RCOM_1359390
description Ethylene-overproduction protein, putative
nr
ID XP_012078876.1
description PREDICTED: ethylene-overproduction protein 1 isoform X1 [Jatropha curcas]
swissprot
ID O65020
description Ethylene-overproduction protein 1 OS=Arabidopsis thaliana GN=ETO1 PE=1 SV=2
trembl
ID B9S5C3
description Ethylene-overproduction protein, putative OS=Ricinus communis GN=RCOM_1359390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60233: 97747-100508 , PASA_asmbl_60235: 101489-101904
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008461_070 0.0 - - PREDICTED: ethylene-overproduction protein 1 isoform X1 [Jatropha curcas]
2 Hb_125961_010 0.0723261445 - - ATP binding protein, putative [Ricinus communis]
3 Hb_188075_010 0.0908902486 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
4 Hb_162676_010 0.0930417671 - - ATP binding protein, putative [Ricinus communis]
5 Hb_027337_130 0.0974033754 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
6 Hb_003226_230 0.0986307972 - - PREDICTED: transposon Ty3-G Gag-Pol polyprotein [Phoenix dactylifera]
7 Hb_002636_070 0.0995220305 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
8 Hb_005057_030 0.1040774158 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
9 Hb_000033_010 0.1068649543 - - Protein MLO, putative [Ricinus communis]
10 Hb_003142_080 0.1088772235 - - receptor serine/threonine kinase, putative [Ricinus communis]
11 Hb_029223_010 0.1129489706 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
12 Hb_004204_220 0.1185151188 - - -
13 Hb_066293_010 0.123127401 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
14 Hb_003858_060 0.1250881934 - - Germin-like protein subfamily 1 member 18 [Theobroma cacao]
15 Hb_002713_060 0.1252165771 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
16 Hb_002983_090 0.1257798895 - - Altered inheritance of mitochondria protein 32 [Glycine soja]
17 Hb_001629_050 0.1293105997 - - structural constituent of cell wall, putative [Ricinus communis]
18 Hb_000120_480 0.1300768274 - - -
19 Hb_169948_010 0.1310176272 - - hypothetical protein VITISV_006524 [Vitis vinifera]
20 Hb_002615_080 0.1328835166 - - PREDICTED: non-specific phospholipase C2 [Jatropha curcas]

Gene co-expression network

sample Hb_008461_070 Hb_008461_070 Hb_125961_010 Hb_125961_010 Hb_008461_070--Hb_125961_010 Hb_188075_010 Hb_188075_010 Hb_008461_070--Hb_188075_010 Hb_162676_010 Hb_162676_010 Hb_008461_070--Hb_162676_010 Hb_027337_130 Hb_027337_130 Hb_008461_070--Hb_027337_130 Hb_003226_230 Hb_003226_230 Hb_008461_070--Hb_003226_230 Hb_002636_070 Hb_002636_070 Hb_008461_070--Hb_002636_070 Hb_125961_010--Hb_003226_230 Hb_125961_010--Hb_162676_010 Hb_000120_480 Hb_000120_480 Hb_125961_010--Hb_000120_480 Hb_005057_030 Hb_005057_030 Hb_125961_010--Hb_005057_030 Hb_066293_010 Hb_066293_010 Hb_125961_010--Hb_066293_010 Hb_188075_010--Hb_027337_130 Hb_001652_130 Hb_001652_130 Hb_188075_010--Hb_001652_130 Hb_001345_040 Hb_001345_040 Hb_188075_010--Hb_001345_040 Hb_000574_340 Hb_000574_340 Hb_188075_010--Hb_000574_340 Hb_000033_010 Hb_000033_010 Hb_188075_010--Hb_000033_010 Hb_162676_010--Hb_003226_230 Hb_162676_010--Hb_000120_480 Hb_162676_010--Hb_005057_030 Hb_014700_030 Hb_014700_030 Hb_162676_010--Hb_014700_030 Hb_027337_130--Hb_002636_070 Hb_027337_130--Hb_000574_340 Hb_004291_050 Hb_004291_050 Hb_027337_130--Hb_004291_050 Hb_027337_130--Hb_000033_010 Hb_003226_230--Hb_000120_480 Hb_003226_230--Hb_005057_030 Hb_005723_090 Hb_005723_090 Hb_003226_230--Hb_005723_090 Hb_003226_230--Hb_066293_010 Hb_029223_010 Hb_029223_010 Hb_002636_070--Hb_029223_010 Hb_000680_130 Hb_000680_130 Hb_002636_070--Hb_000680_130 Hb_002713_060 Hb_002713_060 Hb_002636_070--Hb_002713_060 Hb_000705_040 Hb_000705_040 Hb_002636_070--Hb_000705_040 Hb_000270_640 Hb_000270_640 Hb_002636_070--Hb_000270_640
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0298252 2.74301 2.07467 4.22717 0.0179098 0.0214291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0270455 0 0 1.95769 10.32

CAGE analysis