Hb_000120_480

Information

Type -
Description -
Location Contig120: 351901-353158
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06135: 351024-351342
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_480 0.0 - - -
2 Hb_003226_230 0.0486449189 - - PREDICTED: transposon Ty3-G Gag-Pol polyprotein [Phoenix dactylifera]
3 Hb_005723_090 0.0622612078 - - conserved hypothetical protein [Ricinus communis]
4 Hb_162676_010 0.0666924027 - - ATP binding protein, putative [Ricinus communis]
5 Hb_125961_010 0.0708539011 - - ATP binding protein, putative [Ricinus communis]
6 Hb_001158_250 0.0721901531 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005057_030 0.0724834978 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
8 Hb_009522_020 0.0848890191 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
9 Hb_173387_010 0.0890389811 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
10 Hb_000271_130 0.0895526863 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
11 Hb_002713_060 0.090502065 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
12 Hb_005183_100 0.0914816646 - - hypothetical protein CICLE_v10002898mg [Citrus clementina]
13 Hb_014700_030 0.0917723195 - - tryptophan synthase beta chain, putative [Ricinus communis]
14 Hb_066293_010 0.0926883348 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
15 Hb_010222_060 0.094279154 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_000622_030 0.0971239908 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
17 Hb_003050_330 0.1099811421 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
18 Hb_001305_020 0.1100419971 - - PREDICTED: uncharacterized protein LOC102623247 [Citrus sinensis]
19 Hb_005051_010 0.1109526691 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
20 Hb_000347_320 0.1119579312 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]

Gene co-expression network

sample Hb_000120_480 Hb_000120_480 Hb_003226_230 Hb_003226_230 Hb_000120_480--Hb_003226_230 Hb_005723_090 Hb_005723_090 Hb_000120_480--Hb_005723_090 Hb_162676_010 Hb_162676_010 Hb_000120_480--Hb_162676_010 Hb_125961_010 Hb_125961_010 Hb_000120_480--Hb_125961_010 Hb_001158_250 Hb_001158_250 Hb_000120_480--Hb_001158_250 Hb_005057_030 Hb_005057_030 Hb_000120_480--Hb_005057_030 Hb_003226_230--Hb_162676_010 Hb_003226_230--Hb_125961_010 Hb_003226_230--Hb_005057_030 Hb_003226_230--Hb_005723_090 Hb_066293_010 Hb_066293_010 Hb_003226_230--Hb_066293_010 Hb_005183_100 Hb_005183_100 Hb_005723_090--Hb_005183_100 Hb_005723_090--Hb_005057_030 Hb_000622_030 Hb_000622_030 Hb_005723_090--Hb_000622_030 Hb_005723_090--Hb_001158_250 Hb_001305_020 Hb_001305_020 Hb_005723_090--Hb_001305_020 Hb_162676_010--Hb_125961_010 Hb_162676_010--Hb_005057_030 Hb_014700_030 Hb_014700_030 Hb_162676_010--Hb_014700_030 Hb_008461_070 Hb_008461_070 Hb_162676_010--Hb_008461_070 Hb_125961_010--Hb_005057_030 Hb_125961_010--Hb_008461_070 Hb_125961_010--Hb_066293_010 Hb_001158_250--Hb_000622_030 Hb_001232_040 Hb_001232_040 Hb_001158_250--Hb_001232_040 Hb_001158_250--Hb_001305_020 Hb_000271_130 Hb_000271_130 Hb_001158_250--Hb_000271_130 Hb_005057_030--Hb_005183_100 Hb_002713_060 Hb_002713_060 Hb_005057_030--Hb_002713_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.03564 0.778964 1.78296 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.231837 3.0531

CAGE analysis