Hb_001158_250

Information

Type -
Description -
Location Contig1158: 195668-196989
Sequence    

Annotation

kegg
ID rcu:RCOM_1504840
description hypothetical protein
nr
ID XP_002511121.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RA96
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1504840 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001158_250 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000622_030 0.050063201 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
3 Hb_000120_480 0.0721901531 - - -
4 Hb_005723_090 0.0724773653 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001232_040 0.079508287 - - PREDICTED: uncharacterized protein LOC105634974 [Jatropha curcas]
6 Hb_001305_020 0.0844110661 - - PREDICTED: uncharacterized protein LOC102623247 [Citrus sinensis]
7 Hb_000271_130 0.091174482 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
8 Hb_003050_330 0.0935701023 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
9 Hb_005183_100 0.0962981433 - - hypothetical protein CICLE_v10002898mg [Citrus clementina]
10 Hb_000000_290 0.0970610614 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
11 Hb_003226_230 0.1015889744 - - PREDICTED: transposon Ty3-G Gag-Pol polyprotein [Phoenix dactylifera]
12 Hb_005051_010 0.103310802 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
13 Hb_005790_010 0.1033690597 - - hypothetical protein POPTR_0004s24080g [Populus trichocarpa]
14 Hb_002785_010 0.1049881464 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
15 Hb_005057_030 0.1122130279 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
16 Hb_009522_020 0.1131435926 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
17 Hb_008689_010 0.1187573901 - - hypothetical protein POPTR_0006s25330g [Populus trichocarpa]
18 Hb_001950_100 0.1193144983 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
19 Hb_007666_010 0.1215983951 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
20 Hb_003494_150 0.1239037891 - - Silicon transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_001158_250 Hb_001158_250 Hb_000622_030 Hb_000622_030 Hb_001158_250--Hb_000622_030 Hb_000120_480 Hb_000120_480 Hb_001158_250--Hb_000120_480 Hb_005723_090 Hb_005723_090 Hb_001158_250--Hb_005723_090 Hb_001232_040 Hb_001232_040 Hb_001158_250--Hb_001232_040 Hb_001305_020 Hb_001305_020 Hb_001158_250--Hb_001305_020 Hb_000271_130 Hb_000271_130 Hb_001158_250--Hb_000271_130 Hb_000622_030--Hb_001305_020 Hb_000622_030--Hb_005723_090 Hb_000000_290 Hb_000000_290 Hb_000622_030--Hb_000000_290 Hb_000622_030--Hb_001232_040 Hb_005183_100 Hb_005183_100 Hb_000622_030--Hb_005183_100 Hb_003226_230 Hb_003226_230 Hb_000120_480--Hb_003226_230 Hb_000120_480--Hb_005723_090 Hb_162676_010 Hb_162676_010 Hb_000120_480--Hb_162676_010 Hb_125961_010 Hb_125961_010 Hb_000120_480--Hb_125961_010 Hb_005057_030 Hb_005057_030 Hb_000120_480--Hb_005057_030 Hb_005723_090--Hb_005183_100 Hb_005723_090--Hb_005057_030 Hb_005723_090--Hb_001305_020 Hb_001232_040--Hb_000271_130 Hb_001232_040--Hb_000000_290 Hb_001950_100 Hb_001950_100 Hb_001232_040--Hb_001950_100 Hb_001232_040--Hb_005723_090 Hb_005051_010 Hb_005051_010 Hb_001305_020--Hb_005051_010 Hb_002902_070 Hb_002902_070 Hb_001305_020--Hb_002902_070 Hb_000834_100 Hb_000834_100 Hb_001305_020--Hb_000834_100 Hb_000395_230 Hb_000395_230 Hb_000271_130--Hb_000395_230 Hb_000271_130--Hb_000120_480 Hb_000271_130--Hb_005183_100 Hb_000271_130--Hb_005723_090 Hb_009522_020 Hb_009522_020 Hb_000271_130--Hb_009522_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.130616 0.0639473 0.240095 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0203047 0.303739

CAGE analysis