Hb_000395_230

Information

Type -
Description -
Location Contig395: 224534-226074
Sequence    

Annotation

kegg
ID vvi:100266212
description mitogen-activated protein kinase kinase kinase 1
nr
ID XP_002281202.1
description PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Vitis vinifera]
swissprot
ID Q62925
description Mitogen-activated protein kinase kinase kinase 1 OS=Rattus norvegicus GN=Map3k1 PE=1 SV=1
trembl
ID F6H3D1
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03300 PE=4 SV=1
Gene Ontology
ID GO:0008270
description mitogen-activated protein kinase kinase kinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000395_230 0.0 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Vitis vinifera]
2 Hb_000271_130 0.0827127292 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
3 Hb_173387_010 0.0896307436 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
4 Hb_026549_060 0.1042731033 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
5 Hb_009522_020 0.1043195129 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
6 Hb_002193_080 0.1101161381 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
7 Hb_005843_010 0.11060728 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
8 Hb_010222_060 0.1106723407 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_002713_060 0.1141583391 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
10 Hb_102179_010 0.114550858 - - protein binding protein, putative [Ricinus communis]
11 Hb_001557_010 0.1148307085 - - PREDICTED: extensin [Jatropha curcas]
12 Hb_132840_170 0.1157029443 transcription factor TF Family: NAC Transcription factor [Theobroma cacao]
13 Hb_000958_090 0.1167642841 - - PREDICTED: cation/H(+) antiporter 28 [Jatropha curcas]
14 Hb_005678_020 0.1174843211 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_000120_480 0.1190903652 - - -
16 Hb_001296_060 0.1196051793 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
17 Hb_002246_030 0.1200420759 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
18 Hb_000347_320 0.1267981849 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
19 Hb_000462_010 0.1296725223 - - hypothetical protein VITISV_041696 [Vitis vinifera]
20 Hb_036790_110 0.1297212166 - - hypothetical protein JCGZ_22271 [Jatropha curcas]

Gene co-expression network

sample Hb_000395_230 Hb_000395_230 Hb_000271_130 Hb_000271_130 Hb_000395_230--Hb_000271_130 Hb_173387_010 Hb_173387_010 Hb_000395_230--Hb_173387_010 Hb_026549_060 Hb_026549_060 Hb_000395_230--Hb_026549_060 Hb_009522_020 Hb_009522_020 Hb_000395_230--Hb_009522_020 Hb_002193_080 Hb_002193_080 Hb_000395_230--Hb_002193_080 Hb_005843_010 Hb_005843_010 Hb_000395_230--Hb_005843_010 Hb_000120_480 Hb_000120_480 Hb_000271_130--Hb_000120_480 Hb_005183_100 Hb_005183_100 Hb_000271_130--Hb_005183_100 Hb_001158_250 Hb_001158_250 Hb_000271_130--Hb_001158_250 Hb_005723_090 Hb_005723_090 Hb_000271_130--Hb_005723_090 Hb_000271_130--Hb_009522_020 Hb_173387_010--Hb_009522_020 Hb_132840_170 Hb_132840_170 Hb_173387_010--Hb_132840_170 Hb_000958_090 Hb_000958_090 Hb_173387_010--Hb_000958_090 Hb_002713_060 Hb_002713_060 Hb_173387_010--Hb_002713_060 Hb_010222_060 Hb_010222_060 Hb_173387_010--Hb_010222_060 Hb_004835_020 Hb_004835_020 Hb_173387_010--Hb_004835_020 Hb_001433_090 Hb_001433_090 Hb_026549_060--Hb_001433_090 Hb_001541_200 Hb_001541_200 Hb_026549_060--Hb_001541_200 Hb_026549_060--Hb_000958_090 Hb_020956_030 Hb_020956_030 Hb_026549_060--Hb_020956_030 Hb_005183_050 Hb_005183_050 Hb_026549_060--Hb_005183_050 Hb_005010_030 Hb_005010_030 Hb_026549_060--Hb_005010_030 Hb_009522_020--Hb_010222_060 Hb_013394_120 Hb_013394_120 Hb_009522_020--Hb_013394_120 Hb_001206_100 Hb_001206_100 Hb_009522_020--Hb_001206_100 Hb_009522_020--Hb_005183_100 Hb_001296_060 Hb_001296_060 Hb_009522_020--Hb_001296_060 Hb_008689_010 Hb_008689_010 Hb_002193_080--Hb_008689_010 Hb_005211_210 Hb_005211_210 Hb_002193_080--Hb_005211_210 Hb_003050_330 Hb_003050_330 Hb_002193_080--Hb_003050_330 Hb_003008_020 Hb_003008_020 Hb_002193_080--Hb_003008_020 Hb_000201_010 Hb_000201_010 Hb_002193_080--Hb_000201_010 Hb_005675_070 Hb_005675_070 Hb_002193_080--Hb_005675_070 Hb_005678_020 Hb_005678_020 Hb_005843_010--Hb_005678_020 Hb_000462_010 Hb_000462_010 Hb_005843_010--Hb_000462_010 Hb_009315_010 Hb_009315_010 Hb_005843_010--Hb_009315_010 Hb_005843_010--Hb_005010_030 Hb_000708_020 Hb_000708_020 Hb_005843_010--Hb_000708_020 Hb_005066_040 Hb_005066_040 Hb_005843_010--Hb_005066_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.938678 1.22064 2.35218 0.0737716 0.0432236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.106882 3.86407

CAGE analysis