Hb_000201_010

Information

Type -
Description -
Location Contig201: 10455-16181
Sequence    

Annotation

kegg
ID rcu:RCOM_0683170
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.24)
nr
ID CBI30744.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q9M8T0
description Probable inactive receptor kinase At3g02880 OS=Arabidopsis thaliana GN=At3g02880 PE=1 SV=1
trembl
ID W9QSH1
description Putative LRR receptor-like serine/threonine-protein kinase OS=Morus notabilis GN=L484_016252 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20414: 11294-12978 , PASA_asmbl_20415: 13650-14441 , PASA_asmbl_20416: 14805-15027 , PASA_asmbl_20417: 15585-15926
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000201_010 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_005211_210 0.0800367971 - - lysine and histidine specific transporter family protein [Populus trichocarpa]
3 Hb_008689_010 0.0974098971 - - hypothetical protein POPTR_0006s25330g [Populus trichocarpa]
4 Hb_000258_230 0.0991131386 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002193_080 0.1006657134 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
6 Hb_002043_070 0.1036505503 - - PREDICTED: jacalin-related lectin 19 [Jatropha curcas]
7 Hb_003050_330 0.1056515321 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
8 Hb_005675_070 0.1069346986 - - hypothetical protein EUGRSUZ_K01585 [Eucalyptus grandis]
9 Hb_000434_060 0.1085175885 desease resistance Gene Name: hmm Disease resistance protein RPM1, putative [Ricinus communis]
10 Hb_009771_040 0.1089334296 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
11 Hb_158189_010 0.1109286965 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
12 Hb_007103_020 0.1122339342 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]
13 Hb_152277_010 0.1156627677 - - PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]
14 Hb_002168_070 0.1161201578 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
15 Hb_000179_060 0.1199481307 - - hypothetical protein POPTR_0010s23130g, partial [Populus trichocarpa]
16 Hb_001242_040 0.1237668427 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
17 Hb_026050_010 0.1242730683 - - protein phosphatase 2c, putative [Ricinus communis]
18 Hb_005790_010 0.1268497939 - - hypothetical protein POPTR_0004s24080g [Populus trichocarpa]
19 Hb_002785_010 0.1297528933 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
20 Hb_000983_130 0.1318334866 - - transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000201_010 Hb_000201_010 Hb_005211_210 Hb_005211_210 Hb_000201_010--Hb_005211_210 Hb_008689_010 Hb_008689_010 Hb_000201_010--Hb_008689_010 Hb_000258_230 Hb_000258_230 Hb_000201_010--Hb_000258_230 Hb_002193_080 Hb_002193_080 Hb_000201_010--Hb_002193_080 Hb_002043_070 Hb_002043_070 Hb_000201_010--Hb_002043_070 Hb_003050_330 Hb_003050_330 Hb_000201_010--Hb_003050_330 Hb_005211_210--Hb_002193_080 Hb_005211_210--Hb_008689_010 Hb_005211_210--Hb_002043_070 Hb_005675_070 Hb_005675_070 Hb_005211_210--Hb_005675_070 Hb_000434_060 Hb_000434_060 Hb_005211_210--Hb_000434_060 Hb_008689_010--Hb_002193_080 Hb_003008_020 Hb_003008_020 Hb_008689_010--Hb_003008_020 Hb_008689_010--Hb_003050_330 Hb_008689_010--Hb_005675_070 Hb_001902_040 Hb_001902_040 Hb_008689_010--Hb_001902_040 Hb_009771_040 Hb_009771_040 Hb_000258_230--Hb_009771_040 Hb_002250_140 Hb_002250_140 Hb_000258_230--Hb_002250_140 Hb_007103_020 Hb_007103_020 Hb_000258_230--Hb_007103_020 Hb_152277_010 Hb_152277_010 Hb_000258_230--Hb_152277_010 Hb_026050_010 Hb_026050_010 Hb_000258_230--Hb_026050_010 Hb_002193_080--Hb_003050_330 Hb_002193_080--Hb_003008_020 Hb_002193_080--Hb_005675_070 Hb_002168_070 Hb_002168_070 Hb_002043_070--Hb_002168_070 Hb_002053_190 Hb_002053_190 Hb_002043_070--Hb_002053_190 Hb_002890_330 Hb_002890_330 Hb_002043_070--Hb_002890_330 Hb_002043_070--Hb_000434_060 Hb_002043_070--Hb_009771_040 Hb_003494_150 Hb_003494_150 Hb_003050_330--Hb_003494_150 Hb_003050_330--Hb_003008_020 Hb_032202_010 Hb_032202_010 Hb_003050_330--Hb_032202_010 Hb_007666_010 Hb_007666_010 Hb_003050_330--Hb_007666_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00793916 5.2917 2.65975 7.28733 0.0153788 0.041643
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0180205 0 0 0.0788438 6.29692

CAGE analysis