Hb_032202_010

Information

Type -
Description -
Location Contig32202: 15949-18246
Sequence    

Annotation

kegg
ID rcu:RCOM_1613020
description Xylem serine proteinase 1 precursor, putative (EC:3.4.21.25)
nr
ID XP_012083506.1
description PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
swissprot
ID Q84WS0
description Subtilisin-like protease SBT1.1 OS=Arabidopsis thaliana GN=SBTI1.1 PE=1 SV=1
trembl
ID A0A067JXY0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14478 PE=3 SV=1
Gene Ontology
ID GO:0005618
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34063: 15764-18404
cDNA
(Sanger)
(ID:Location)		 017_F19.ab1: 15768-16207 , 036_E10.ab1: 15764-16647 , 037_J05.ab1: 15764-16640 , 040_J07.ab1: 15764-16663

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032202_010 0.0 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
2 Hb_003050_330 0.0839784147 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
3 Hb_000752_040 0.0940727791 - - PREDICTED: uncharacterized protein LOC104884990 [Beta vulgaris subsp. vulgaris]
4 Hb_002785_010 0.0981012037 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
5 Hb_003494_150 0.1014151283 - - Silicon transporter, putative [Ricinus communis]
6 Hb_007666_010 0.1037506308 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
7 Hb_000369_040 0.1144600284 - - Ankyrin repeat family protein, putative [Theobroma cacao]
8 Hb_003008_020 0.1228886113 - - auxin-responsive family protein [Populus trichocarpa]
9 Hb_000201_010 0.1330954267 - - unnamed protein product [Vitis vinifera]
10 Hb_001158_250 0.1446871401 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004126_050 0.1455721031 - - PREDICTED: L-type lectin-domain containing receptor kinase VII.1 [Tarenaya hassleriana]
12 Hb_002193_080 0.1463633668 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
13 Hb_008689_010 0.1498689744 - - hypothetical protein POPTR_0006s25330g [Populus trichocarpa]
14 Hb_005790_010 0.1521967289 - - hypothetical protein POPTR_0004s24080g [Populus trichocarpa]
15 Hb_006243_010 0.1546791827 - - PREDICTED: cell wall protein IFF6 [Populus euphratica]
16 Hb_007103_020 0.1564676838 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]
17 Hb_005288_100 0.1575058698 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
18 Hb_000061_440 0.1632770509 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
19 Hb_000780_160 0.1635651928 - - hypothetical protein RCOM_0483300 [Ricinus communis]
20 Hb_001242_040 0.1637329988 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]

Gene co-expression network

sample Hb_032202_010 Hb_032202_010 Hb_003050_330 Hb_003050_330 Hb_032202_010--Hb_003050_330 Hb_000752_040 Hb_000752_040 Hb_032202_010--Hb_000752_040 Hb_002785_010 Hb_002785_010 Hb_032202_010--Hb_002785_010 Hb_003494_150 Hb_003494_150 Hb_032202_010--Hb_003494_150 Hb_007666_010 Hb_007666_010 Hb_032202_010--Hb_007666_010 Hb_000369_040 Hb_000369_040 Hb_032202_010--Hb_000369_040 Hb_003050_330--Hb_003494_150 Hb_003008_020 Hb_003008_020 Hb_003050_330--Hb_003008_020 Hb_008689_010 Hb_008689_010 Hb_003050_330--Hb_008689_010 Hb_002193_080 Hb_002193_080 Hb_003050_330--Hb_002193_080 Hb_003050_330--Hb_007666_010 Hb_000752_040--Hb_003008_020 Hb_000752_040--Hb_007666_010 Hb_000752_040--Hb_003050_330 Hb_000752_040--Hb_002785_010 Hb_005018_030 Hb_005018_030 Hb_000752_040--Hb_005018_030 Hb_002785_010--Hb_003050_330 Hb_002785_010--Hb_000369_040 Hb_001158_250 Hb_001158_250 Hb_002785_010--Hb_001158_250 Hb_002785_010--Hb_007666_010 Hb_003494_150--Hb_007666_010 Hb_003494_150--Hb_002193_080 Hb_003494_150--Hb_003008_020 Hb_003494_150--Hb_008689_010 Hb_000347_320 Hb_000347_320 Hb_007666_010--Hb_000347_320 Hb_007666_010--Hb_000369_040 Hb_000369_040--Hb_003050_330 Hb_005051_010 Hb_005051_010 Hb_000369_040--Hb_005051_010 Hb_001242_040 Hb_001242_040 Hb_000369_040--Hb_001242_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.33936 1.4912 4.28068 0 0.00808307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0304788 0 0.0121111 7.11219

CAGE analysis