Hb_002250_140

Information

Type -
Description -
Location Contig2250: 171989-173540
Sequence    

Annotation

kegg
ID pop:POPTR_0013s15150g
description POPTRDRAFT_663594; hypothetical protein
nr
ID XP_011021029.1
description PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 isoform X1 [Populus euphratica]
swissprot
ID Q1PEY6
description EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana GN=EPFL6 PE=1 SV=1
trembl
ID B9I6W3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s15150g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23431: 171491-171741 , PASA_asmbl_23432: 171897-173547 , PASA_asmbl_23433: 172833-173203
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002250_140 0.0 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 isoform X1 [Populus euphratica]
2 Hb_009771_040 0.073174485 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
3 Hb_026050_010 0.073310343 - - protein phosphatase 2c, putative [Ricinus communis]
4 Hb_173107_020 0.0764962253 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
5 Hb_000258_230 0.0820659401 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007103_020 0.1029740934 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]
7 Hb_002335_010 0.1048594729 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
8 Hb_001269_530 0.1077248314 - - ATP-binding cassette transporter, putative [Ricinus communis]
9 Hb_027892_050 0.109854085 - - hypothetical protein PHAVU_009G226400g [Phaseolus vulgaris]
10 Hb_000270_750 0.1100561399 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
11 Hb_005618_010 0.1133319827 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
12 Hb_010174_200 0.1153652147 - - PREDICTED: uncharacterized protein LOC105644743 isoform X1 [Jatropha curcas]
13 Hb_114733_010 0.1159924206 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
14 Hb_000813_090 0.1173850935 - - hypothetical protein CARUB_v10019318mg [Capsella rubella]
15 Hb_000172_070 0.1185638878 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
16 Hb_002168_070 0.1207565468 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
17 Hb_007292_050 0.121119321 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
18 Hb_000537_090 0.1216528877 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001913_030 0.1222861469 - - ankyrin repeat protein [Bruguiera gymnorhiza]
20 Hb_002066_010 0.1245654329 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002250_140 Hb_002250_140 Hb_009771_040 Hb_009771_040 Hb_002250_140--Hb_009771_040 Hb_026050_010 Hb_026050_010 Hb_002250_140--Hb_026050_010 Hb_173107_020 Hb_173107_020 Hb_002250_140--Hb_173107_020 Hb_000258_230 Hb_000258_230 Hb_002250_140--Hb_000258_230 Hb_007103_020 Hb_007103_020 Hb_002250_140--Hb_007103_020 Hb_002335_010 Hb_002335_010 Hb_002250_140--Hb_002335_010 Hb_002168_070 Hb_002168_070 Hb_009771_040--Hb_002168_070 Hb_009771_040--Hb_026050_010 Hb_009771_040--Hb_000258_230 Hb_000434_060 Hb_000434_060 Hb_009771_040--Hb_000434_060 Hb_009771_040--Hb_173107_020 Hb_000574_230 Hb_000574_230 Hb_026050_010--Hb_000574_230 Hb_007257_070 Hb_007257_070 Hb_026050_010--Hb_007257_070 Hb_010174_200 Hb_010174_200 Hb_026050_010--Hb_010174_200 Hb_026050_010--Hb_000258_230 Hb_000384_020 Hb_000384_020 Hb_173107_020--Hb_000384_020 Hb_114733_010 Hb_114733_010 Hb_173107_020--Hb_114733_010 Hb_000991_080 Hb_000991_080 Hb_173107_020--Hb_000991_080 Hb_000045_080 Hb_000045_080 Hb_173107_020--Hb_000045_080 Hb_000258_230--Hb_007103_020 Hb_152277_010 Hb_152277_010 Hb_000258_230--Hb_152277_010 Hb_000201_010 Hb_000201_010 Hb_000258_230--Hb_000201_010 Hb_027892_050 Hb_027892_050 Hb_007103_020--Hb_027892_050 Hb_007103_020--Hb_009771_040 Hb_007103_020--Hb_152277_010 Hb_005790_010 Hb_005790_010 Hb_007103_020--Hb_005790_010 Hb_000956_100 Hb_000956_100 Hb_002335_010--Hb_000956_100 Hb_002335_010--Hb_027892_050 Hb_000041_160 Hb_000041_160 Hb_002335_010--Hb_000041_160 Hb_001269_530 Hb_001269_530 Hb_002335_010--Hb_001269_530 Hb_005074_010 Hb_005074_010 Hb_002335_010--Hb_005074_010 Hb_001913_030 Hb_001913_030 Hb_002335_010--Hb_001913_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.108201 14.0397 4.60793 17.7985 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.33927 10.111

CAGE analysis