Hb_005790_010

Information

Type -
Description -
Location Contig5790: 1-2569
Sequence    

Annotation

kegg
ID pop:POPTR_0004s24080g
description hypothetical protein
nr
ID XP_006385117.1
description hypothetical protein POPTR_0004s24080g [Populus trichocarpa]
swissprot
ID Q9LT96
description Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1
trembl
ID U5GL28
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s24080g PE=3 SV=1
Gene Ontology
ID GO:0016301
description probable leucine-rich repeat receptor-like protein kinase at5g49770

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49796: 570-941 , PASA_asmbl_49797: 1302-2803
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005790_010 0.0 - - hypothetical protein POPTR_0004s24080g [Populus trichocarpa]
2 Hb_152277_010 0.0918691036 - - PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]
3 Hb_000258_230 0.1025285715 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001158_250 0.1033690597 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007103_020 0.1073041245 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]
6 Hb_000622_030 0.1090769766 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
7 Hb_001232_040 0.1124470259 - - PREDICTED: uncharacterized protein LOC105634974 [Jatropha curcas]
8 Hb_008689_010 0.1184681405 - - hypothetical protein POPTR_0006s25330g [Populus trichocarpa]
9 Hb_002168_070 0.1250918607 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
10 Hb_005211_210 0.1255956232 - - lysine and histidine specific transporter family protein [Populus trichocarpa]
11 Hb_003050_330 0.1257362549 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
12 Hb_000201_010 0.1268497939 - - unnamed protein product [Vitis vinifera]
13 Hb_001366_300 0.1281339037 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
14 Hb_001950_100 0.129075205 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
15 Hb_000983_130 0.129184077 - - transcription factor, putative [Ricinus communis]
16 Hb_002785_010 0.1307531591 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
17 Hb_000000_290 0.1323813862 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
18 Hb_077774_010 0.1326682757 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
19 Hb_003494_150 0.1350969811 - - Silicon transporter, putative [Ricinus communis]
20 Hb_009771_040 0.1358133601 - - hypothetical protein JCGZ_25039 [Jatropha curcas]

Gene co-expression network

sample Hb_005790_010 Hb_005790_010 Hb_152277_010 Hb_152277_010 Hb_005790_010--Hb_152277_010 Hb_000258_230 Hb_000258_230 Hb_005790_010--Hb_000258_230 Hb_001158_250 Hb_001158_250 Hb_005790_010--Hb_001158_250 Hb_007103_020 Hb_007103_020 Hb_005790_010--Hb_007103_020 Hb_000622_030 Hb_000622_030 Hb_005790_010--Hb_000622_030 Hb_001232_040 Hb_001232_040 Hb_005790_010--Hb_001232_040 Hb_152277_010--Hb_000258_230 Hb_000983_130 Hb_000983_130 Hb_152277_010--Hb_000983_130 Hb_004102_200 Hb_004102_200 Hb_152277_010--Hb_004102_200 Hb_152277_010--Hb_007103_020 Hb_009771_040 Hb_009771_040 Hb_152277_010--Hb_009771_040 Hb_000258_230--Hb_009771_040 Hb_002250_140 Hb_002250_140 Hb_000258_230--Hb_002250_140 Hb_000258_230--Hb_007103_020 Hb_026050_010 Hb_026050_010 Hb_000258_230--Hb_026050_010 Hb_000201_010 Hb_000201_010 Hb_000258_230--Hb_000201_010 Hb_001158_250--Hb_000622_030 Hb_000120_480 Hb_000120_480 Hb_001158_250--Hb_000120_480 Hb_005723_090 Hb_005723_090 Hb_001158_250--Hb_005723_090 Hb_001158_250--Hb_001232_040 Hb_001305_020 Hb_001305_020 Hb_001158_250--Hb_001305_020 Hb_000271_130 Hb_000271_130 Hb_001158_250--Hb_000271_130 Hb_027892_050 Hb_027892_050 Hb_007103_020--Hb_027892_050 Hb_007103_020--Hb_009771_040 Hb_007103_020--Hb_002250_140 Hb_000622_030--Hb_001305_020 Hb_000622_030--Hb_005723_090 Hb_000000_290 Hb_000000_290 Hb_000622_030--Hb_000000_290 Hb_000622_030--Hb_001232_040 Hb_005183_100 Hb_005183_100 Hb_000622_030--Hb_005183_100 Hb_001232_040--Hb_000271_130 Hb_001232_040--Hb_000000_290 Hb_001950_100 Hb_001950_100 Hb_001232_040--Hb_001950_100 Hb_001232_040--Hb_005723_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0161502 6.57264 2.46611 12.9003 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.147968 0.162979 0 0.445811 11.7612

CAGE analysis