Hb_000271_130

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig271: 260506-261718
Sequence    

Annotation

kegg
ID tcc:TCM_021955
description DNA binding with one finger 2.4, putative
nr
ID XP_007027045.1
description DNA binding with one finger 2.4, putative [Theobroma cacao]
swissprot
ID O80928
description Dof zinc finger protein DOF2.4 OS=Arabidopsis thaliana GN=DOF2.4 PE=2 SV=1
trembl
ID A0A061ET14
description DNA binding with one finger 2.4, putative OS=Theobroma cacao GN=TCM_021955 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000271_130 0.0 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
2 Hb_000395_230 0.0827127292 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Vitis vinifera]
3 Hb_000120_480 0.0895526863 - - -
4 Hb_005183_100 0.0901057659 - - hypothetical protein CICLE_v10002898mg [Citrus clementina]
5 Hb_001158_250 0.091174482 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005723_090 0.0938294665 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009522_020 0.0950487881 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
8 Hb_001232_040 0.0978521925 - - PREDICTED: uncharacterized protein LOC105634974 [Jatropha curcas]
9 Hb_173387_010 0.1013341527 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
10 Hb_000622_030 0.1083218891 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
11 Hb_005057_030 0.1100987144 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
12 Hb_000000_290 0.1109574602 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
13 Hb_000347_320 0.111387884 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
14 Hb_002986_030 0.1123399579 - - hypothetical protein JCGZ_12380 [Jatropha curcas]
15 Hb_001206_100 0.1173028979 - - hypothetical protein PRUPE_ppa021915mg, partial [Prunus persica]
16 Hb_003008_020 0.1174947474 - - auxin-responsive family protein [Populus trichocarpa]
17 Hb_036790_110 0.1182194346 - - hypothetical protein JCGZ_22271 [Jatropha curcas]
18 Hb_000230_490 0.1184769258 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001902_040 0.1189252753 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001269_540 0.1192879686 - - hypothetical protein VITISV_038016 [Vitis vinifera]

Gene co-expression network

sample Hb_000271_130 Hb_000271_130 Hb_000395_230 Hb_000395_230 Hb_000271_130--Hb_000395_230 Hb_000120_480 Hb_000120_480 Hb_000271_130--Hb_000120_480 Hb_005183_100 Hb_005183_100 Hb_000271_130--Hb_005183_100 Hb_001158_250 Hb_001158_250 Hb_000271_130--Hb_001158_250 Hb_005723_090 Hb_005723_090 Hb_000271_130--Hb_005723_090 Hb_009522_020 Hb_009522_020 Hb_000271_130--Hb_009522_020 Hb_173387_010 Hb_173387_010 Hb_000395_230--Hb_173387_010 Hb_026549_060 Hb_026549_060 Hb_000395_230--Hb_026549_060 Hb_000395_230--Hb_009522_020 Hb_002193_080 Hb_002193_080 Hb_000395_230--Hb_002193_080 Hb_005843_010 Hb_005843_010 Hb_000395_230--Hb_005843_010 Hb_003226_230 Hb_003226_230 Hb_000120_480--Hb_003226_230 Hb_000120_480--Hb_005723_090 Hb_162676_010 Hb_162676_010 Hb_000120_480--Hb_162676_010 Hb_125961_010 Hb_125961_010 Hb_000120_480--Hb_125961_010 Hb_000120_480--Hb_001158_250 Hb_005057_030 Hb_005057_030 Hb_000120_480--Hb_005057_030 Hb_005183_100--Hb_005723_090 Hb_001206_100 Hb_001206_100 Hb_005183_100--Hb_001206_100 Hb_016277_030 Hb_016277_030 Hb_005183_100--Hb_016277_030 Hb_005183_100--Hb_009522_020 Hb_005183_100--Hb_005057_030 Hb_000000_290 Hb_000000_290 Hb_005183_100--Hb_000000_290 Hb_000622_030 Hb_000622_030 Hb_001158_250--Hb_000622_030 Hb_001158_250--Hb_005723_090 Hb_001232_040 Hb_001232_040 Hb_001158_250--Hb_001232_040 Hb_001305_020 Hb_001305_020 Hb_001158_250--Hb_001305_020 Hb_005723_090--Hb_005057_030 Hb_005723_090--Hb_000622_030 Hb_005723_090--Hb_001305_020 Hb_010222_060 Hb_010222_060 Hb_009522_020--Hb_010222_060 Hb_013394_120 Hb_013394_120 Hb_009522_020--Hb_013394_120 Hb_009522_020--Hb_173387_010 Hb_009522_020--Hb_001206_100 Hb_001296_060 Hb_001296_060 Hb_009522_020--Hb_001296_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.479791 0.425777 1.31358 0.0192686 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0742964 1.82425

CAGE analysis