Hb_016277_030

Information

Type -
Description -
Location Contig16277: 21064-27591
Sequence    

Annotation

kegg
ID cit:102609641
description LRR receptor-like serine/threonine-protein kinase GSO2-like
nr
ID KDP30191.1
description hypothetical protein JCGZ_16973 [Jatropha curcas]
swissprot
ID Q9FIZ3
description LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2
trembl
ID A0A067K1U5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16973 PE=4 SV=1
Gene Ontology
ID GO:0005515
description lrr receptor-like serine threonine-protein kinase gso1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016277_030 0.0 - - hypothetical protein JCGZ_16973 [Jatropha curcas]
2 Hb_004374_030 0.045511805 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
3 Hb_004466_090 0.0573431758 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005183_100 0.0620747499 - - hypothetical protein CICLE_v10002898mg [Citrus clementina]
5 Hb_001206_100 0.0725319842 - - hypothetical protein PRUPE_ppa021915mg, partial [Prunus persica]
6 Hb_004032_190 0.073769006 - - PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP-forming] isoform X1 [Jatropha curcas]
7 Hb_000784_060 0.0788091213 - - conserved hypothetical protein [Ricinus communis]
8 Hb_009421_070 0.0843294073 - - PREDICTED: cell number regulator 1-like [Jatropha curcas]
9 Hb_002119_110 0.0869132162 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
10 Hb_000963_120 0.0917914346 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
11 Hb_005723_090 0.0945191121 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001369_390 0.0951860738 - - Glycerol-3-phosphate transporter, putative [Ricinus communis]
13 Hb_000000_290 0.095277279 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
14 Hb_002095_020 0.1037397579 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
15 Hb_000364_090 0.1040531376 - - PREDICTED: filament-like plant protein 7 isoform X2 [Jatropha curcas]
16 Hb_002284_060 0.1051540597 - - sugar transporter, putative [Ricinus communis]
17 Hb_001296_060 0.1098722084 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
18 Hb_000665_210 0.1121752337 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
19 Hb_001268_150 0.1121845074 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
20 Hb_005057_030 0.1128972859 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_016277_030 Hb_016277_030 Hb_004374_030 Hb_004374_030 Hb_016277_030--Hb_004374_030 Hb_004466_090 Hb_004466_090 Hb_016277_030--Hb_004466_090 Hb_005183_100 Hb_005183_100 Hb_016277_030--Hb_005183_100 Hb_001206_100 Hb_001206_100 Hb_016277_030--Hb_001206_100 Hb_004032_190 Hb_004032_190 Hb_016277_030--Hb_004032_190 Hb_000784_060 Hb_000784_060 Hb_016277_030--Hb_000784_060 Hb_004374_030--Hb_004466_090 Hb_004374_030--Hb_000784_060 Hb_000963_120 Hb_000963_120 Hb_004374_030--Hb_000963_120 Hb_002119_110 Hb_002119_110 Hb_004374_030--Hb_002119_110 Hb_002095_020 Hb_002095_020 Hb_004374_030--Hb_002095_020 Hb_004466_090--Hb_000784_060 Hb_002518_230 Hb_002518_230 Hb_004466_090--Hb_002518_230 Hb_000152_570 Hb_000152_570 Hb_004466_090--Hb_000152_570 Hb_004466_090--Hb_004032_190 Hb_005723_090 Hb_005723_090 Hb_005183_100--Hb_005723_090 Hb_005183_100--Hb_001206_100 Hb_009522_020 Hb_009522_020 Hb_005183_100--Hb_009522_020 Hb_005057_030 Hb_005057_030 Hb_005183_100--Hb_005057_030 Hb_000000_290 Hb_000000_290 Hb_005183_100--Hb_000000_290 Hb_009421_070 Hb_009421_070 Hb_001206_100--Hb_009421_070 Hb_002942_200 Hb_002942_200 Hb_001206_100--Hb_002942_200 Hb_001206_100--Hb_009522_020 Hb_001206_100--Hb_004032_190 Hb_000364_090 Hb_000364_090 Hb_004032_190--Hb_000364_090 Hb_004032_190--Hb_009421_070 Hb_004032_190--Hb_000784_060 Hb_000665_210 Hb_000665_210 Hb_000784_060--Hb_000665_210 Hb_000784_060--Hb_009421_070 Hb_001369_390 Hb_001369_390 Hb_000784_060--Hb_001369_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0923313 0.134264 0.458859 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0758015 0.455893

CAGE analysis