Hb_001369_390

Information

Type -
Description -
Location Contig1369: 345682-349267
Sequence    

Annotation

kegg
ID rcu:RCOM_1500400
description Glycerol-3-phosphate transporter, putative
nr
ID XP_002510951.1
description Glycerol-3-phosphate transporter, putative [Ricinus communis]
swissprot
ID Q9C5L3
description Putative glycerol-3-phosphate transporter 1 OS=Arabidopsis thaliana GN=At3g47420 PE=2 SV=1
trembl
ID B9R9S6
description Glycerol-3-phosphate transporter, putative OS=Ricinus communis GN=RCOM_1500400 PE=4 SV=1
Gene Ontology
ID GO:0016021
description glycerol-3-phosphate transporter 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10171: 345697-349215 , PASA_asmbl_10172: 346408-346517
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_390 0.0 - - Glycerol-3-phosphate transporter, putative [Ricinus communis]
2 Hb_002095_020 0.0658374548 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
3 Hb_000784_060 0.0715643472 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004374_030 0.0949406746 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
5 Hb_016277_030 0.0951860738 - - hypothetical protein JCGZ_16973 [Jatropha curcas]
6 Hb_000836_030 0.0958466559 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
7 Hb_001046_030 0.0981009802 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_004466_090 0.098617695 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002284_060 0.0996091452 - - sugar transporter, putative [Ricinus communis]
10 Hb_017358_020 0.101208583 - - hypothetical protein POPTR_0014s16490g [Populus trichocarpa]
11 Hb_001417_060 0.102200894 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
12 Hb_000290_030 0.1022322537 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
13 Hb_002119_110 0.1036471991 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
14 Hb_009421_070 0.1037126775 - - PREDICTED: cell number regulator 1-like [Jatropha curcas]
15 Hb_003058_170 0.105173077 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
16 Hb_005183_100 0.1056806316 - - hypothetical protein CICLE_v10002898mg [Citrus clementina]
17 Hb_001206_100 0.1072677878 - - hypothetical protein PRUPE_ppa021915mg, partial [Prunus persica]
18 Hb_005057_030 0.1076410902 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
19 Hb_004032_190 0.1086641045 - - PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP-forming] isoform X1 [Jatropha curcas]
20 Hb_000665_210 0.1088782684 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]

Gene co-expression network

sample Hb_001369_390 Hb_001369_390 Hb_002095_020 Hb_002095_020 Hb_001369_390--Hb_002095_020 Hb_000784_060 Hb_000784_060 Hb_001369_390--Hb_000784_060 Hb_004374_030 Hb_004374_030 Hb_001369_390--Hb_004374_030 Hb_016277_030 Hb_016277_030 Hb_001369_390--Hb_016277_030 Hb_000836_030 Hb_000836_030 Hb_001369_390--Hb_000836_030 Hb_001046_030 Hb_001046_030 Hb_001369_390--Hb_001046_030 Hb_003266_010 Hb_003266_010 Hb_002095_020--Hb_003266_010 Hb_000868_130 Hb_000868_130 Hb_002095_020--Hb_000868_130 Hb_002095_020--Hb_004374_030 Hb_004204_220 Hb_004204_220 Hb_002095_020--Hb_004204_220 Hb_002095_020--Hb_000784_060 Hb_000665_210 Hb_000665_210 Hb_000784_060--Hb_000665_210 Hb_004466_090 Hb_004466_090 Hb_000784_060--Hb_004466_090 Hb_009421_070 Hb_009421_070 Hb_000784_060--Hb_009421_070 Hb_000784_060--Hb_004374_030 Hb_000784_060--Hb_016277_030 Hb_004374_030--Hb_016277_030 Hb_004374_030--Hb_004466_090 Hb_000963_120 Hb_000963_120 Hb_004374_030--Hb_000963_120 Hb_002119_110 Hb_002119_110 Hb_004374_030--Hb_002119_110 Hb_016277_030--Hb_004466_090 Hb_005183_100 Hb_005183_100 Hb_016277_030--Hb_005183_100 Hb_001206_100 Hb_001206_100 Hb_016277_030--Hb_001206_100 Hb_004032_190 Hb_004032_190 Hb_016277_030--Hb_004032_190 Hb_004607_160 Hb_004607_160 Hb_000836_030--Hb_004607_160 Hb_000836_030--Hb_000784_060 Hb_006198_040 Hb_006198_040 Hb_000836_030--Hb_006198_040 Hb_000130_480 Hb_000130_480 Hb_000836_030--Hb_000130_480 Hb_000836_030--Hb_002095_020 Hb_017358_020 Hb_017358_020 Hb_001046_030--Hb_017358_020 Hb_001417_060 Hb_001417_060 Hb_001046_030--Hb_001417_060 Hb_001046_030--Hb_000868_130 Hb_001046_030--Hb_003266_010 Hb_032695_010 Hb_032695_010 Hb_001046_030--Hb_032695_010 Hb_000856_200 Hb_000856_200 Hb_001046_030--Hb_000856_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0469549 6.98262 11.7544 26.0605 0.0526717 0.0242098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.162844 0.40042 0.0608909 6.4878 29.1185

CAGE analysis