Hb_004374_030

Information

Type -
Description -
Location Contig4374: 55282-58130
Sequence    

Annotation

kegg
ID rcu:RCOM_1688080
description polygalacturonase, putative (EC:3.2.1.15)
nr
ID XP_012086833.1
description PREDICTED: probable polygalacturonase [Jatropha curcas]
swissprot
ID A7PZL3
description Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1
trembl
ID A0A067JND8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20548 PE=3 SV=1
Gene Ontology
ID GO:0005576
description probable polygalacturonase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42492: 55312-58171
cDNA
(Sanger)
(ID:Location)		 042_P11.ab1: 56394-58171

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004374_030 0.0 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
2 Hb_016277_030 0.045511805 - - hypothetical protein JCGZ_16973 [Jatropha curcas]
3 Hb_004466_090 0.055198348 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000784_060 0.0719901275 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000963_120 0.0738285512 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
6 Hb_002119_110 0.0772621979 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
7 Hb_002095_020 0.0923506307 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
8 Hb_004032_190 0.094353379 - - PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP-forming] isoform X1 [Jatropha curcas]
9 Hb_001369_390 0.0949406746 - - Glycerol-3-phosphate transporter, putative [Ricinus communis]
10 Hb_005183_100 0.0957449241 - - hypothetical protein CICLE_v10002898mg [Citrus clementina]
11 Hb_002284_060 0.0979915893 - - sugar transporter, putative [Ricinus communis]
12 Hb_000309_070 0.1008759745 - - PREDICTED: 2-methylene-furan-3-one reductase [Cucumis melo]
13 Hb_002518_230 0.1026919512 - - -
14 Hb_005329_030 0.1062464887 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
15 Hb_006992_010 0.1072497083 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
16 Hb_000152_570 0.1076708034 - - 21 kDa protein precursor, putative [Ricinus communis]
17 Hb_009421_070 0.1082661138 - - PREDICTED: cell number regulator 1-like [Jatropha curcas]
18 Hb_002391_240 0.108575848 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003894_180 0.1115296996 - - PREDICTED: uncharacterized protein LOC104245193, partial [Nicotiana sylvestris]
20 Hb_000000_290 0.1119095969 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]

Gene co-expression network

sample Hb_004374_030 Hb_004374_030 Hb_016277_030 Hb_016277_030 Hb_004374_030--Hb_016277_030 Hb_004466_090 Hb_004466_090 Hb_004374_030--Hb_004466_090 Hb_000784_060 Hb_000784_060 Hb_004374_030--Hb_000784_060 Hb_000963_120 Hb_000963_120 Hb_004374_030--Hb_000963_120 Hb_002119_110 Hb_002119_110 Hb_004374_030--Hb_002119_110 Hb_002095_020 Hb_002095_020 Hb_004374_030--Hb_002095_020 Hb_016277_030--Hb_004466_090 Hb_005183_100 Hb_005183_100 Hb_016277_030--Hb_005183_100 Hb_001206_100 Hb_001206_100 Hb_016277_030--Hb_001206_100 Hb_004032_190 Hb_004032_190 Hb_016277_030--Hb_004032_190 Hb_016277_030--Hb_000784_060 Hb_004466_090--Hb_000784_060 Hb_002518_230 Hb_002518_230 Hb_004466_090--Hb_002518_230 Hb_000152_570 Hb_000152_570 Hb_004466_090--Hb_000152_570 Hb_004466_090--Hb_004032_190 Hb_000665_210 Hb_000665_210 Hb_000784_060--Hb_000665_210 Hb_009421_070 Hb_009421_070 Hb_000784_060--Hb_009421_070 Hb_001369_390 Hb_001369_390 Hb_000784_060--Hb_001369_390 Hb_000963_120--Hb_002119_110 Hb_000963_120--Hb_016277_030 Hb_006916_140 Hb_006916_140 Hb_000963_120--Hb_006916_140 Hb_000309_070 Hb_000309_070 Hb_000963_120--Hb_000309_070 Hb_012239_060 Hb_012239_060 Hb_000963_120--Hb_012239_060 Hb_002119_110--Hb_016277_030 Hb_002119_110--Hb_000784_060 Hb_002119_110--Hb_004032_190 Hb_002119_110--Hb_012239_060 Hb_002095_020--Hb_001369_390 Hb_003266_010 Hb_003266_010 Hb_002095_020--Hb_003266_010 Hb_000868_130 Hb_000868_130 Hb_002095_020--Hb_000868_130 Hb_004204_220 Hb_004204_220 Hb_002095_020--Hb_004204_220 Hb_002095_020--Hb_000784_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0123123 15.8011 22.2356 84.9397 0.0230582 0.0850429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0440969 0.0415667 19.2679 85.5611

CAGE analysis