Hb_002095_020

Information

Type -
Description -
Location Contig2095: 49989-57710
Sequence    

Annotation

kegg
ID rcu:RCOM_0487060
description glutamate receptor 3 plant, putative
nr
ID XP_012086332.1
description PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
swissprot
ID Q8GXJ4
description Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=GLR3.4 PE=2 SV=2
trembl
ID A0A067JSQ9
description Glutamate receptor OS=Jatropha curcas GN=JCGZ_22868 PE=3 SV=1
Gene Ontology
ID GO:0016021
description glutamate receptor -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21663: 50027-57938 , PASA_asmbl_21664: 50177-57961 , PASA_asmbl_21665: 54375-54796
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002095_020 0.0 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
2 Hb_001369_390 0.0658374548 - - Glycerol-3-phosphate transporter, putative [Ricinus communis]
3 Hb_003266_010 0.0823579343 - - hypothetical protein JCGZ_21945 [Jatropha curcas]
4 Hb_000868_130 0.0873420098 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
5 Hb_004374_030 0.0923506307 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
6 Hb_004204_220 0.0947302451 - - -
7 Hb_000784_060 0.0947660758 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000836_030 0.0956619556 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
9 Hb_001046_030 0.0974312115 - - UDP-glucosyltransferase, putative [Ricinus communis]
10 Hb_017358_020 0.0990130387 - - hypothetical protein POPTR_0014s16490g [Populus trichocarpa]
11 Hb_002902_070 0.0991211298 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
12 Hb_144449_010 0.1001106821 - - Potassium transporter, putative [Ricinus communis]
13 Hb_000473_100 0.1022509004 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
14 Hb_016277_030 0.1037397579 - - hypothetical protein JCGZ_16973 [Jatropha curcas]
15 Hb_003147_040 0.1038524844 - - PREDICTED: probable calcium-binding protein CML18 [Jatropha curcas]
16 Hb_011161_090 0.1046208645 - - -
17 Hb_002284_060 0.1048876442 - - sugar transporter, putative [Ricinus communis]
18 Hb_002119_110 0.1058093475 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
19 Hb_001629_050 0.1098137854 - - structural constituent of cell wall, putative [Ricinus communis]
20 Hb_004466_090 0.110038493 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002095_020 Hb_002095_020 Hb_001369_390 Hb_001369_390 Hb_002095_020--Hb_001369_390 Hb_003266_010 Hb_003266_010 Hb_002095_020--Hb_003266_010 Hb_000868_130 Hb_000868_130 Hb_002095_020--Hb_000868_130 Hb_004374_030 Hb_004374_030 Hb_002095_020--Hb_004374_030 Hb_004204_220 Hb_004204_220 Hb_002095_020--Hb_004204_220 Hb_000784_060 Hb_000784_060 Hb_002095_020--Hb_000784_060 Hb_001369_390--Hb_000784_060 Hb_001369_390--Hb_004374_030 Hb_016277_030 Hb_016277_030 Hb_001369_390--Hb_016277_030 Hb_000836_030 Hb_000836_030 Hb_001369_390--Hb_000836_030 Hb_001046_030 Hb_001046_030 Hb_001369_390--Hb_001046_030 Hb_003266_010--Hb_000868_130 Hb_000473_100 Hb_000473_100 Hb_003266_010--Hb_000473_100 Hb_017358_020 Hb_017358_020 Hb_003266_010--Hb_017358_020 Hb_144449_010 Hb_144449_010 Hb_003266_010--Hb_144449_010 Hb_003266_010--Hb_001046_030 Hb_000868_130--Hb_001046_030 Hb_002902_070 Hb_002902_070 Hb_000868_130--Hb_002902_070 Hb_000868_130--Hb_017358_020 Hb_000868_130--Hb_000473_100 Hb_000069_540 Hb_000069_540 Hb_000868_130--Hb_000069_540 Hb_004374_030--Hb_016277_030 Hb_004466_090 Hb_004466_090 Hb_004374_030--Hb_004466_090 Hb_004374_030--Hb_000784_060 Hb_000963_120 Hb_000963_120 Hb_004374_030--Hb_000963_120 Hb_002119_110 Hb_002119_110 Hb_004374_030--Hb_002119_110 Hb_001629_050 Hb_001629_050 Hb_004204_220--Hb_001629_050 Hb_003858_060 Hb_003858_060 Hb_004204_220--Hb_003858_060 Hb_011161_090 Hb_011161_090 Hb_004204_220--Hb_011161_090 Hb_000834_100 Hb_000834_100 Hb_004204_220--Hb_000834_100 Hb_004204_220--Hb_002902_070 Hb_000665_210 Hb_000665_210 Hb_000784_060--Hb_000665_210 Hb_000784_060--Hb_004466_090 Hb_009421_070 Hb_009421_070 Hb_000784_060--Hb_009421_070 Hb_000784_060--Hb_016277_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0362832 3.00939 3.39786 8.77353 0 0.0451039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0138307 0.0435355 0.0208353 2.75343 9.4821

CAGE analysis