Hb_001629_050

Information

Type -
Description -
Location Contig1629: 40657-41811
Sequence    

Annotation

kegg
ID rcu:RCOM_0380590
description structural constituent of cell wall, putative
nr
ID XP_002533713.1
description structural constituent of cell wall, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T644
description Structural constituent of cell wall, putative OS=Ricinus communis GN=RCOM_0380590 PE=4 SV=1
Gene Ontology
ID GO:0005576
description structural constituent of cell

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001629_050 0.0 - - structural constituent of cell wall, putative [Ricinus communis]
2 Hb_004204_220 0.0554457748 - - -
3 Hb_167211_010 0.1085819722 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
4 Hb_000392_490 0.1097427374 - - PREDICTED: uncharacterized protein LOC105640495 isoform X1 [Jatropha curcas]
5 Hb_002095_020 0.1098137854 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
6 Hb_003858_060 0.112398989 - - Germin-like protein subfamily 1 member 18 [Theobroma cacao]
7 Hb_001778_040 0.1148583051 - - hypothetical protein VITISV_021035 [Vitis vinifera]
8 Hb_011161_090 0.1154352732 - - -
9 Hb_000836_030 0.1161781777 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
10 Hb_004607_160 0.1185149901 - - PREDICTED: uncharacterized protein LOC105134931 [Populus euphratica]
11 Hb_000309_070 0.1235642716 - - PREDICTED: 2-methylene-furan-3-one reductase [Cucumis melo]
12 Hb_000054_130 0.1240610354 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
13 Hb_005332_050 0.127475572 - - hypothetical protein POPTR_0017s10650g [Populus trichocarpa]
14 Hb_004374_030 0.1289998272 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
15 Hb_008461_070 0.1293105997 - - PREDICTED: ethylene-overproduction protein 1 isoform X1 [Jatropha curcas]
16 Hb_009641_040 0.1333477528 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
17 Hb_003142_080 0.1346685984 - - receptor serine/threonine kinase, putative [Ricinus communis]
18 Hb_006198_040 0.1358836082 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003266_010 0.1369062424 - - hypothetical protein JCGZ_21945 [Jatropha curcas]
20 Hb_006355_070 0.1376532256 transcription factor TF Family: bHLH Phytochrome-interacting factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001629_050 Hb_001629_050 Hb_004204_220 Hb_004204_220 Hb_001629_050--Hb_004204_220 Hb_167211_010 Hb_167211_010 Hb_001629_050--Hb_167211_010 Hb_000392_490 Hb_000392_490 Hb_001629_050--Hb_000392_490 Hb_002095_020 Hb_002095_020 Hb_001629_050--Hb_002095_020 Hb_003858_060 Hb_003858_060 Hb_001629_050--Hb_003858_060 Hb_001778_040 Hb_001778_040 Hb_001629_050--Hb_001778_040 Hb_004204_220--Hb_003858_060 Hb_011161_090 Hb_011161_090 Hb_004204_220--Hb_011161_090 Hb_004204_220--Hb_002095_020 Hb_000834_100 Hb_000834_100 Hb_004204_220--Hb_000834_100 Hb_002902_070 Hb_002902_070 Hb_004204_220--Hb_002902_070 Hb_000054_130 Hb_000054_130 Hb_167211_010--Hb_000054_130 Hb_167211_010--Hb_001778_040 Hb_001109_170 Hb_001109_170 Hb_167211_010--Hb_001109_170 Hb_001622_020 Hb_001622_020 Hb_167211_010--Hb_001622_020 Hb_124579_020 Hb_124579_020 Hb_167211_010--Hb_124579_020 Hb_005332_050 Hb_005332_050 Hb_167211_010--Hb_005332_050 Hb_000309_070 Hb_000309_070 Hb_000392_490--Hb_000309_070 Hb_006916_140 Hb_006916_140 Hb_000392_490--Hb_006916_140 Hb_005329_030 Hb_005329_030 Hb_000392_490--Hb_005329_030 Hb_026198_020 Hb_026198_020 Hb_000392_490--Hb_026198_020 Hb_000963_120 Hb_000963_120 Hb_000392_490--Hb_000963_120 Hb_001369_390 Hb_001369_390 Hb_002095_020--Hb_001369_390 Hb_003266_010 Hb_003266_010 Hb_002095_020--Hb_003266_010 Hb_000868_130 Hb_000868_130 Hb_002095_020--Hb_000868_130 Hb_004374_030 Hb_004374_030 Hb_002095_020--Hb_004374_030 Hb_000784_060 Hb_000784_060 Hb_002095_020--Hb_000784_060 Hb_003858_060--Hb_000834_100 Hb_002876_280 Hb_002876_280 Hb_003858_060--Hb_002876_280 Hb_000856_210 Hb_000856_210 Hb_003858_060--Hb_000856_210 Hb_094437_020 Hb_094437_020 Hb_003858_060--Hb_094437_020 Hb_001778_040--Hb_001622_020 Hb_001778_040--Hb_000054_130 Hb_000254_060 Hb_000254_060 Hb_001778_040--Hb_000254_060 Hb_003992_220 Hb_003992_220 Hb_001778_040--Hb_003992_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0215729 0.0170303 0.0552926 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0311474 0.0793954

CAGE analysis