Hb_002876_280

Information

Type -
Description -
Location Contig2876: 256290-256922
Sequence    

Annotation

kegg
ID rcu:RCOM_0686540
description hypothetical protein
nr
ID XP_002526836.1
description hypothetical protein RCOM_0686540 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SLG7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0686540 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002876_280 0.0 - - hypothetical protein RCOM_0686540 [Ricinus communis]
2 Hb_011432_010 0.0943314841 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
3 Hb_003858_060 0.1012258503 - - Germin-like protein subfamily 1 member 18 [Theobroma cacao]
4 Hb_000856_210 0.1014522607 - - nitrate transporter, putative [Ricinus communis]
5 Hb_002973_130 0.1150318442 - - PREDICTED: uncharacterized protein LOC104609908 [Nelumbo nucifera]
6 Hb_037519_010 0.1211800008 - - PREDICTED: auxin-induced in root cultures protein 12-like [Jatropha curcas]
7 Hb_145080_010 0.1331516171 - - PREDICTED: uncharacterized protein LOC105643750 [Jatropha curcas]
8 Hb_006355_070 0.1356735405 transcription factor TF Family: bHLH Phytochrome-interacting factor, putative [Ricinus communis]
9 Hb_006351_120 0.1357452642 - - hypothetical protein CICLE_v10030803mg [Citrus clementina]
10 Hb_094437_020 0.1359590401 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
11 Hb_112791_030 0.13805612 - - Uncharacterized protein TCM_027940 [Theobroma cacao]
12 Hb_011358_010 0.1410285728 - - -
13 Hb_002631_110 0.1417783269 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
14 Hb_000207_240 0.1429690849 - - hypothetical protein RCOM_0686540 [Ricinus communis]
15 Hb_019925_020 0.1472160208 - - electron carrier, putative [Ricinus communis]
16 Hb_038833_010 0.1506578279 - - polyprotein [Ananas comosus]
17 Hb_000245_100 0.15183004 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
18 Hb_004204_220 0.1619952958 - - -
19 Hb_016564_050 0.1630701651 - - -
20 Hb_001277_380 0.1634862067 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 [Tarenaya hassleriana]

Gene co-expression network

sample Hb_002876_280 Hb_002876_280 Hb_011432_010 Hb_011432_010 Hb_002876_280--Hb_011432_010 Hb_003858_060 Hb_003858_060 Hb_002876_280--Hb_003858_060 Hb_000856_210 Hb_000856_210 Hb_002876_280--Hb_000856_210 Hb_002973_130 Hb_002973_130 Hb_002876_280--Hb_002973_130 Hb_037519_010 Hb_037519_010 Hb_002876_280--Hb_037519_010 Hb_145080_010 Hb_145080_010 Hb_002876_280--Hb_145080_010 Hb_011432_010--Hb_002973_130 Hb_011432_010--Hb_037519_010 Hb_011358_010 Hb_011358_010 Hb_011432_010--Hb_011358_010 Hb_011432_010--Hb_145080_010 Hb_112791_030 Hb_112791_030 Hb_011432_010--Hb_112791_030 Hb_004204_220 Hb_004204_220 Hb_003858_060--Hb_004204_220 Hb_000834_100 Hb_000834_100 Hb_003858_060--Hb_000834_100 Hb_003858_060--Hb_000856_210 Hb_094437_020 Hb_094437_020 Hb_003858_060--Hb_094437_020 Hb_001629_050 Hb_001629_050 Hb_003858_060--Hb_001629_050 Hb_019925_020 Hb_019925_020 Hb_000856_210--Hb_019925_020 Hb_000207_240 Hb_000207_240 Hb_000856_210--Hb_000207_240 Hb_006351_120 Hb_006351_120 Hb_000856_210--Hb_006351_120 Hb_000856_210--Hb_094437_020 Hb_002973_130--Hb_037519_010 Hb_002973_130--Hb_011358_010 Hb_002973_130--Hb_145080_010 Hb_002973_130--Hb_112791_030 Hb_037519_010--Hb_011358_010 Hb_037519_010--Hb_145080_010 Hb_037519_010--Hb_112791_030 Hb_145080_010--Hb_112791_030 Hb_145080_010--Hb_011358_010 Hb_007295_020 Hb_007295_020 Hb_145080_010--Hb_007295_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.49608 0.309741 5.28704 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.15962 8.73171

CAGE analysis