Hb_000856_210

Information

Type -
Description -
Location Contig856: 189261-190719
Sequence    

Annotation

kegg
ID rcu:RCOM_1513380
description nitrate transporter, putative
nr
ID XP_002511509.1
description nitrate transporter, putative [Ricinus communis]
swissprot
ID Q9LV10
description Protein NRT1/ PTR FAMILY 2.11 OS=Arabidopsis thaliana GN=NPF2.11 PE=1 SV=1
trembl
ID B9R934
description Nitrate transporter, putative OS=Ricinus communis GN=RCOM_1513380 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_210 0.0 - - nitrate transporter, putative [Ricinus communis]
2 Hb_019925_020 0.0608807535 - - electron carrier, putative [Ricinus communis]
3 Hb_000207_240 0.068040126 - - hypothetical protein RCOM_0686540 [Ricinus communis]
4 Hb_006351_120 0.0891851977 - - hypothetical protein CICLE_v10030803mg [Citrus clementina]
5 Hb_002876_280 0.1014522607 - - hypothetical protein RCOM_0686540 [Ricinus communis]
6 Hb_003858_060 0.1027872984 - - Germin-like protein subfamily 1 member 18 [Theobroma cacao]
7 Hb_094437_020 0.1165192864 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
8 Hb_000000_290 0.1242393778 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
9 Hb_001097_140 0.1254339074 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000023_180 0.1272434135 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
11 Hb_001396_130 0.1302869075 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004204_220 0.1330785037 - - -
13 Hb_006916_140 0.1338774085 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
14 Hb_005329_030 0.138664646 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
15 Hb_000622_030 0.1394090376 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
16 Hb_037519_010 0.1418868445 - - PREDICTED: auxin-induced in root cultures protein 12-like [Jatropha curcas]
17 Hb_001158_250 0.1428472651 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005018_030 0.1430971304 - - hypothetical protein CICLE_v10019811mg [Citrus clementina]
19 Hb_000245_100 0.1450805461 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
20 Hb_005723_090 0.1468936299 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000856_210 Hb_000856_210 Hb_019925_020 Hb_019925_020 Hb_000856_210--Hb_019925_020 Hb_000207_240 Hb_000207_240 Hb_000856_210--Hb_000207_240 Hb_006351_120 Hb_006351_120 Hb_000856_210--Hb_006351_120 Hb_002876_280 Hb_002876_280 Hb_000856_210--Hb_002876_280 Hb_003858_060 Hb_003858_060 Hb_000856_210--Hb_003858_060 Hb_094437_020 Hb_094437_020 Hb_000856_210--Hb_094437_020 Hb_019925_020--Hb_000207_240 Hb_019925_020--Hb_006351_120 Hb_000000_290 Hb_000000_290 Hb_019925_020--Hb_000000_290 Hb_005018_030 Hb_005018_030 Hb_019925_020--Hb_005018_030 Hb_000023_180 Hb_000023_180 Hb_019925_020--Hb_000023_180 Hb_001097_140 Hb_001097_140 Hb_000207_240--Hb_001097_140 Hb_003714_030 Hb_003714_030 Hb_000207_240--Hb_003714_030 Hb_000207_240--Hb_006351_120 Hb_001396_130 Hb_001396_130 Hb_000207_240--Hb_001396_130 Hb_006351_120--Hb_094437_020 Hb_125181_010 Hb_125181_010 Hb_006351_120--Hb_125181_010 Hb_006351_120--Hb_001396_130 Hb_011432_010 Hb_011432_010 Hb_002876_280--Hb_011432_010 Hb_002876_280--Hb_003858_060 Hb_002973_130 Hb_002973_130 Hb_002876_280--Hb_002973_130 Hb_037519_010 Hb_037519_010 Hb_002876_280--Hb_037519_010 Hb_145080_010 Hb_145080_010 Hb_002876_280--Hb_145080_010 Hb_004204_220 Hb_004204_220 Hb_003858_060--Hb_004204_220 Hb_000834_100 Hb_000834_100 Hb_003858_060--Hb_000834_100 Hb_003858_060--Hb_094437_020 Hb_001629_050 Hb_001629_050 Hb_003858_060--Hb_001629_050 Hb_094437_020--Hb_000207_240 Hb_006916_140 Hb_006916_140 Hb_094437_020--Hb_006916_140 Hb_000392_490 Hb_000392_490 Hb_094437_020--Hb_000392_490 Hb_094437_020--Hb_004204_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.325992 0.0520632 0.692819 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.148452 0.896545

CAGE analysis