Hb_005018_030

Information

Type -
Description -
Location Contig5018: 37981-39854
Sequence    

Annotation

kegg
ID cic:CICLE_v10019811mg
description hypothetical protein
nr
ID XP_006441830.1
description hypothetical protein CICLE_v10019811mg [Citrus clementina]
swissprot
ID H2DH18
description Cytochrome P450 CYP736A12 OS=Panax ginseng PE=2 SV=1
trembl
ID V4TTK1
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019811mg PE=3 SV=1
Gene Ontology
ID GO:0004497
description licodione synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45900: 38622-39854
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005018_030 0.0 - - hypothetical protein CICLE_v10019811mg [Citrus clementina]
2 Hb_012691_060 0.0829419439 - - PREDICTED: isoflavone 2'-hydroxylase-like isoform X1 [Prunus mume]
3 Hb_000020_180 0.1055731609 - - laccase, putative [Ricinus communis]
4 Hb_019925_020 0.1140571416 - - electron carrier, putative [Ricinus communis]
5 Hb_000230_490 0.1188934057 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000752_040 0.1220137679 - - PREDICTED: uncharacterized protein LOC104884990 [Beta vulgaris subsp. vulgaris]
7 Hb_005183_030 0.12708984 - - PREDICTED: probable calcium-binding protein CML16 [Jatropha curcas]
8 Hb_000347_320 0.1320990971 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
9 Hb_001186_040 0.1363762653 - - Peroxidase 3 precursor, putative [Ricinus communis]
10 Hb_001158_250 0.1389441265 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001269_540 0.140013974 - - hypothetical protein VITISV_038016 [Vitis vinifera]
12 Hb_007666_010 0.140781269 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
13 Hb_000856_210 0.1430971304 - - nitrate transporter, putative [Ricinus communis]
14 Hb_000207_240 0.1454849907 - - hypothetical protein RCOM_0686540 [Ricinus communis]
15 Hb_006351_120 0.1508423028 - - hypothetical protein CICLE_v10030803mg [Citrus clementina]
16 Hb_009004_010 0.1510629295 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
17 Hb_008001_030 0.1516183385 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
18 Hb_043127_010 0.1521723359 - - PREDICTED: uncharacterized protein LOC105648822 [Jatropha curcas]
19 Hb_000271_130 0.1531706551 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
20 Hb_001232_040 0.1533965596 - - PREDICTED: uncharacterized protein LOC105634974 [Jatropha curcas]

Gene co-expression network

sample Hb_005018_030 Hb_005018_030 Hb_012691_060 Hb_012691_060 Hb_005018_030--Hb_012691_060 Hb_000020_180 Hb_000020_180 Hb_005018_030--Hb_000020_180 Hb_019925_020 Hb_019925_020 Hb_005018_030--Hb_019925_020 Hb_000230_490 Hb_000230_490 Hb_005018_030--Hb_000230_490 Hb_000752_040 Hb_000752_040 Hb_005018_030--Hb_000752_040 Hb_005183_030 Hb_005183_030 Hb_005018_030--Hb_005183_030 Hb_012691_060--Hb_005183_030 Hb_082972_010 Hb_082972_010 Hb_012691_060--Hb_082972_010 Hb_043127_010 Hb_043127_010 Hb_012691_060--Hb_043127_010 Hb_012691_060--Hb_019925_020 Hb_037519_010 Hb_037519_010 Hb_012691_060--Hb_037519_010 Hb_001366_360 Hb_001366_360 Hb_000020_180--Hb_001366_360 Hb_008001_030 Hb_008001_030 Hb_000020_180--Hb_008001_030 Hb_005827_020 Hb_005827_020 Hb_000020_180--Hb_005827_020 Hb_007227_030 Hb_007227_030 Hb_000020_180--Hb_007227_030 Hb_000311_100 Hb_000311_100 Hb_000020_180--Hb_000311_100 Hb_000856_210 Hb_000856_210 Hb_019925_020--Hb_000856_210 Hb_000207_240 Hb_000207_240 Hb_019925_020--Hb_000207_240 Hb_006351_120 Hb_006351_120 Hb_019925_020--Hb_006351_120 Hb_000000_290 Hb_000000_290 Hb_019925_020--Hb_000000_290 Hb_000023_180 Hb_000023_180 Hb_019925_020--Hb_000023_180 Hb_001269_540 Hb_001269_540 Hb_000230_490--Hb_001269_540 Hb_080797_010 Hb_080797_010 Hb_000230_490--Hb_080797_010 Hb_004837_080 Hb_004837_080 Hb_000230_490--Hb_004837_080 Hb_001186_040 Hb_001186_040 Hb_000230_490--Hb_001186_040 Hb_140595_020 Hb_140595_020 Hb_000230_490--Hb_140595_020 Hb_002119_150 Hb_002119_150 Hb_000230_490--Hb_002119_150 Hb_032202_010 Hb_032202_010 Hb_000752_040--Hb_032202_010 Hb_003008_020 Hb_003008_020 Hb_000752_040--Hb_003008_020 Hb_007666_010 Hb_007666_010 Hb_000752_040--Hb_007666_010 Hb_003050_330 Hb_003050_330 Hb_000752_040--Hb_003050_330 Hb_002785_010 Hb_002785_010 Hb_000752_040--Hb_002785_010 Hb_002631_110 Hb_002631_110 Hb_005183_030--Hb_002631_110 Hb_000347_320 Hb_000347_320 Hb_005183_030--Hb_000347_320 Hb_016734_040 Hb_016734_040 Hb_005183_030--Hb_016734_040 Hb_005183_030--Hb_002785_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 20.294 3.82721 40.8777 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0867001 0.0682116 0 1.70473 70.7821

CAGE analysis