Hb_001269_540

Information

Type -
Description -
Location Contig1269: 564458-569100
Sequence    

Annotation

kegg
ID vvi:100232918
description ABC, VvABCG44, VvPDR14; ABC transporter-like
nr
ID CAN75124.1
description hypothetical protein VITISV_038016 [Vitis vinifera]
swissprot
ID Q8GU88
description Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1
trembl
ID A5BYA5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038016 PE=4 SV=1
Gene Ontology
ID GO:0016787
description pleiotropic drug resistance protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_540 0.0 - - hypothetical protein VITISV_038016 [Vitis vinifera]
2 Hb_080797_010 0.0544785514 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
3 Hb_000230_490 0.0616944103 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004837_080 0.0665378172 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46 [Jatropha curcas]
5 Hb_002119_150 0.074695806 - - hypothetical protein POPTR_0008s13870g [Populus trichocarpa]
6 Hb_000254_080 0.0868983599 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
7 Hb_140595_020 0.0893340675 - - PREDICTED: vegetative cell wall protein gp1-like [Solanum lycopersicum]
8 Hb_007620_020 0.0919491753 - - PREDICTED: cationic amino acid transporter 7, chloroplastic-like isoform X1 [Jatropha curcas]
9 Hb_001097_140 0.0986824471 - - conserved hypothetical protein [Ricinus communis]
10 Hb_089124_010 0.1027588511 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
11 Hb_000260_520 0.1064397047 - - receptor protein kinase, putative [Ricinus communis]
12 Hb_005066_040 0.1092929966 - - Reticuline oxidase precursor, putative [Ricinus communis]
13 Hb_001186_040 0.1094906579 - - Peroxidase 3 precursor, putative [Ricinus communis]
14 Hb_000920_100 0.1106671698 - - o-methyltransferase, putative [Ricinus communis]
15 Hb_000122_230 0.1113003171 - - laccase, putative [Ricinus communis]
16 Hb_001488_160 0.1137009444 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
17 Hb_008727_060 0.1166672219 - - Beta-glucosidase, putative [Ricinus communis]
18 Hb_000608_190 0.1169953188 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Jatropha curcas]
19 Hb_000271_130 0.1192879686 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
20 Hb_001699_110 0.1193455587 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_001269_540 Hb_001269_540 Hb_080797_010 Hb_080797_010 Hb_001269_540--Hb_080797_010 Hb_000230_490 Hb_000230_490 Hb_001269_540--Hb_000230_490 Hb_004837_080 Hb_004837_080 Hb_001269_540--Hb_004837_080 Hb_002119_150 Hb_002119_150 Hb_001269_540--Hb_002119_150 Hb_000254_080 Hb_000254_080 Hb_001269_540--Hb_000254_080 Hb_140595_020 Hb_140595_020 Hb_001269_540--Hb_140595_020 Hb_080797_010--Hb_004837_080 Hb_001097_140 Hb_001097_140 Hb_080797_010--Hb_001097_140 Hb_000122_230 Hb_000122_230 Hb_080797_010--Hb_000122_230 Hb_080797_010--Hb_000230_490 Hb_080797_010--Hb_002119_150 Hb_000230_490--Hb_004837_080 Hb_001186_040 Hb_001186_040 Hb_000230_490--Hb_001186_040 Hb_000230_490--Hb_140595_020 Hb_000230_490--Hb_002119_150 Hb_004837_080--Hb_000254_080 Hb_004837_080--Hb_002119_150 Hb_007620_020 Hb_007620_020 Hb_004837_080--Hb_007620_020 Hb_004837_080--Hb_000122_230 Hb_002119_150--Hb_000254_080 Hb_000538_110 Hb_000538_110 Hb_002119_150--Hb_000538_110 Hb_000260_520 Hb_000260_520 Hb_002119_150--Hb_000260_520 Hb_000254_080--Hb_000122_230 Hb_000254_080--Hb_080797_010 Hb_000997_370 Hb_000997_370 Hb_000254_080--Hb_000997_370 Hb_140595_030 Hb_140595_030 Hb_140595_020--Hb_140595_030 Hb_140595_020--Hb_001186_040 Hb_140595_020--Hb_000260_520 Hb_001104_070 Hb_001104_070 Hb_140595_020--Hb_001104_070 Hb_000155_230 Hb_000155_230 Hb_140595_020--Hb_000155_230 Hb_001105_150 Hb_001105_150 Hb_140595_020--Hb_001105_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0843997 0.0873506 0.378968 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0270753 0.696872

CAGE analysis