Hb_001105_150

Information

Type -
Description -
Location Contig1105: 106797-107998
Sequence    

Annotation

kegg
ID pop:POPTR_0002s18570g
description POPTRDRAFT_644713; GERMIN-LIKE protein 10
nr
ID XP_002302696.1
description GERMIN-LIKE protein 10 [Populus trichocarpa]
swissprot
ID Q9M263
description Germin-like protein subfamily 2 member 4 OS=Arabidopsis thaliana GN=GLP10 PE=2 SV=1
trembl
ID A9PA01
description GERMIN-LIKE protein 10 OS=Populus trichocarpa GN=POPTR_0002s18570g PE=2 SV=1
Gene Ontology
ID GO:0030145
description germin-like protein subfamily 2 member 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03304: 106935-107927
cDNA
(Sanger)
(ID:Location)		 004_B06.ab1: 106986-107927

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001105_150 0.0 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
2 Hb_000155_230 0.0397570978 - - rac gtpase, putative [Ricinus communis]
3 Hb_028818_020 0.0613180701 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
4 Hb_140595_030 0.0715909696 - - -
5 Hb_001123_300 0.0822249812 - - hypothetical protein POPTR_0003s16270g [Populus trichocarpa]
6 Hb_002675_220 0.0840944607 - - PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Populus euphratica]
7 Hb_001104_070 0.0853206184 - - hypothetical protein SORBIDRAFT_10g024640 [Sorghum bicolor]
8 Hb_189208_080 0.0854435898 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 11-like isoform X1 [Jatropha curcas]
9 Hb_140595_020 0.0870025965 - - PREDICTED: vegetative cell wall protein gp1-like [Solanum lycopersicum]
10 Hb_000260_520 0.0876352461 - - receptor protein kinase, putative [Ricinus communis]
11 Hb_002170_030 0.0877230708 - - PREDICTED: laccase-4-like [Jatropha curcas]
12 Hb_101705_040 0.0906979551 - - cytochrome P450, putative [Ricinus communis]
13 Hb_008695_060 0.0919250544 - - unknown [Populus trichocarpa x Populus deltoides]
14 Hb_003906_080 0.0972812454 - - Peroxidase 66 precursor, putative [Ricinus communis]
15 Hb_002250_040 0.1027468479 - - PREDICTED: transcription repressor OFP17 [Jatropha curcas]
16 Hb_003038_070 0.1033294957 - - syntaxin, putative [Ricinus communis]
17 Hb_008705_080 0.1034864576 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
18 Hb_004994_230 0.1045383361 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
19 Hb_006351_090 0.104864249 - - UDP-glycosyltransferase 85A1 [Gossypium arboreum]
20 Hb_023342_010 0.1060773192 - - -

Gene co-expression network

sample Hb_001105_150 Hb_001105_150 Hb_000155_230 Hb_000155_230 Hb_001105_150--Hb_000155_230 Hb_028818_020 Hb_028818_020 Hb_001105_150--Hb_028818_020 Hb_140595_030 Hb_140595_030 Hb_001105_150--Hb_140595_030 Hb_001123_300 Hb_001123_300 Hb_001105_150--Hb_001123_300 Hb_002675_220 Hb_002675_220 Hb_001105_150--Hb_002675_220 Hb_001104_070 Hb_001104_070 Hb_001105_150--Hb_001104_070 Hb_000155_230--Hb_028818_020 Hb_000155_230--Hb_140595_030 Hb_000155_230--Hb_001123_300 Hb_101705_040 Hb_101705_040 Hb_000155_230--Hb_101705_040 Hb_140595_020 Hb_140595_020 Hb_000155_230--Hb_140595_020 Hb_028818_020--Hb_001123_300 Hb_004994_230 Hb_004994_230 Hb_028818_020--Hb_004994_230 Hb_028818_020--Hb_101705_040 Hb_034507_030 Hb_034507_030 Hb_028818_020--Hb_034507_030 Hb_140595_030--Hb_140595_020 Hb_140595_030--Hb_001104_070 Hb_000920_340 Hb_000920_340 Hb_140595_030--Hb_000920_340 Hb_000260_520 Hb_000260_520 Hb_140595_030--Hb_000260_520 Hb_008695_060 Hb_008695_060 Hb_001123_300--Hb_008695_060 Hb_000462_040 Hb_000462_040 Hb_001123_300--Hb_000462_040 Hb_008705_080 Hb_008705_080 Hb_001123_300--Hb_008705_080 Hb_001123_300--Hb_034507_030 Hb_002250_040 Hb_002250_040 Hb_002675_220--Hb_002250_040 Hb_002675_220--Hb_001104_070 Hb_018487_040 Hb_018487_040 Hb_002675_220--Hb_018487_040 Hb_189208_080 Hb_189208_080 Hb_002675_220--Hb_189208_080 Hb_080048_030 Hb_080048_030 Hb_002675_220--Hb_080048_030 Hb_005483_040 Hb_005483_040 Hb_002675_220--Hb_005483_040 Hb_001104_070--Hb_080048_030 Hb_001104_070--Hb_018487_040 Hb_001104_070--Hb_189208_080 Hb_001104_070--Hb_002250_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0195138 9.15827 15.0467 143.137 0.0391375 0.0208937
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0650099 1.42217 309.932

CAGE analysis