Hb_189208_080

Information

Type desease resistance
Description Gene Name: ABC_membrane
Location Contig189208: 48396-63906
Sequence    

Annotation

kegg
ID rcu:RCOM_1343590
description multidrug resistance protein 1, 2, putative (EC:3.6.3.27 3.6.3.44)
nr
ID XP_012082995.1
description PREDICTED: ABC transporter B family member 11-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FWX7
description ABC transporter B family member 11 OS=Arabidopsis thaliana GN=ABCB11 PE=2 SV=1
trembl
ID A0A0E0DUF2
description Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1
Gene Ontology
ID GO:0016021
description atp binding cassette subfamily b4 isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18792: 49157-49411
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_189208_080 0.0 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 11-like isoform X1 [Jatropha curcas]
2 Hb_001104_070 0.0604938436 - - hypothetical protein SORBIDRAFT_10g024640 [Sorghum bicolor]
3 Hb_000920_340 0.0707569631 - - o-methyltransferase, putative [Ricinus communis]
4 Hb_002675_220 0.0755142637 - - PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Populus euphratica]
5 Hb_140595_030 0.0804438486 - - -
6 Hb_011214_080 0.0827631947 - - sucrose synthase 1 [Hevea brasiliensis]
7 Hb_000260_520 0.0828085306 - - receptor protein kinase, putative [Ricinus communis]
8 Hb_018487_040 0.0829576864 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
9 Hb_080048_030 0.0837454731 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
10 Hb_001105_150 0.0854435898 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
11 Hb_002250_040 0.0927407601 - - PREDICTED: transcription repressor OFP17 [Jatropha curcas]
12 Hb_140595_020 0.0939571147 - - PREDICTED: vegetative cell wall protein gp1-like [Solanum lycopersicum]
13 Hb_000155_230 0.0944903971 - - rac gtpase, putative [Ricinus communis]
14 Hb_007718_040 0.0973592418 - - hypothetical protein PRUPE_ppb025054mg [Prunus persica]
15 Hb_000538_110 0.0984607547 - - sucrose synthase 1 [Hevea brasiliensis]
16 Hb_002445_020 0.1059091402 - - -
17 Hb_000220_060 0.1106326833 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 15 [Jatropha curcas]
18 Hb_001488_160 0.1112366122 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
19 Hb_169492_010 0.1140942494 - - PREDICTED: expansin-like B1 [Jatropha curcas]
20 Hb_005483_040 0.1141571721 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]

Gene co-expression network

sample Hb_189208_080 Hb_189208_080 Hb_001104_070 Hb_001104_070 Hb_189208_080--Hb_001104_070 Hb_000920_340 Hb_000920_340 Hb_189208_080--Hb_000920_340 Hb_002675_220 Hb_002675_220 Hb_189208_080--Hb_002675_220 Hb_140595_030 Hb_140595_030 Hb_189208_080--Hb_140595_030 Hb_011214_080 Hb_011214_080 Hb_189208_080--Hb_011214_080 Hb_000260_520 Hb_000260_520 Hb_189208_080--Hb_000260_520 Hb_001104_070--Hb_002675_220 Hb_080048_030 Hb_080048_030 Hb_001104_070--Hb_080048_030 Hb_018487_040 Hb_018487_040 Hb_001104_070--Hb_018487_040 Hb_001104_070--Hb_140595_030 Hb_002250_040 Hb_002250_040 Hb_001104_070--Hb_002250_040 Hb_007718_040 Hb_007718_040 Hb_000920_340--Hb_007718_040 Hb_000920_340--Hb_140595_030 Hb_000920_340--Hb_001104_070 Hb_000920_340--Hb_080048_030 Hb_002445_020 Hb_002445_020 Hb_000920_340--Hb_002445_020 Hb_002675_220--Hb_002250_040 Hb_002675_220--Hb_018487_040 Hb_002675_220--Hb_080048_030 Hb_005483_040 Hb_005483_040 Hb_002675_220--Hb_005483_040 Hb_140595_020 Hb_140595_020 Hb_140595_030--Hb_140595_020 Hb_000155_230 Hb_000155_230 Hb_140595_030--Hb_000155_230 Hb_001105_150 Hb_001105_150 Hb_140595_030--Hb_001105_150 Hb_140595_030--Hb_000260_520 Hb_000538_110 Hb_000538_110 Hb_011214_080--Hb_000538_110 Hb_012760_120 Hb_012760_120 Hb_011214_080--Hb_012760_120 Hb_011214_080--Hb_018487_040 Hb_011214_080--Hb_002250_040 Hb_011214_080--Hb_002675_220 Hb_000260_520--Hb_140595_020 Hb_000260_520--Hb_001104_070 Hb_005062_100 Hb_005062_100 Hb_000260_520--Hb_005062_100 Hb_000260_520--Hb_018487_040 Hb_002119_150 Hb_002119_150 Hb_000260_520--Hb_002119_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00988762 0.520871 1.03796 4.93815 0.00233608 0.00415711
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0105646 0.0789893 0.0240995 0.0673693 14.0893

CAGE analysis