Hb_011214_080

Information

Type -
Description -
Location Contig11214: 77847-82220
Sequence    

Annotation

kegg
ID rcu:RCOM_1123530
description sucrose synthase, putative (EC:2.4.1.13)
nr
ID AGM14946.1
description sucrose synthase 1 [Hevea brasiliensis]
swissprot
ID Q9FX32
description Sucrose synthase 6 OS=Arabidopsis thaliana GN=SUS6 PE=1 SV=1
trembl
ID A0A023HK97
description Sucrose synthase 1 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0016157
description sucrose synthase 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03655: 77842-78023
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011214_080 0.0 - - sucrose synthase 1 [Hevea brasiliensis]
2 Hb_000538_110 0.0732579094 - - sucrose synthase 1 [Hevea brasiliensis]
3 Hb_189208_080 0.0827631947 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 11-like isoform X1 [Jatropha curcas]
4 Hb_012760_120 0.0830297299 - - PREDICTED: peroxidase 64-like [Jatropha curcas]
5 Hb_018487_040 0.0917743505 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
6 Hb_002250_040 0.0927900552 - - PREDICTED: transcription repressor OFP17 [Jatropha curcas]
7 Hb_002675_220 0.0943272582 - - PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Populus euphratica]
8 Hb_005483_040 0.0949294501 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
9 Hb_000739_280 0.0982392032 - - alcohol dehydrogenase, putative [Ricinus communis]
10 Hb_001488_160 0.0997604498 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
11 Hb_080048_030 0.1031343921 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
12 Hb_001104_070 0.1036598237 - - hypothetical protein SORBIDRAFT_10g024640 [Sorghum bicolor]
13 Hb_000260_520 0.1050955232 - - receptor protein kinase, putative [Ricinus communis]
14 Hb_005062_100 0.1086293953 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
15 Hb_003090_240 0.1129496792 - - hypothetical protein JCGZ_25095 [Jatropha curcas]
16 Hb_002329_050 0.1164116303 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002081_140 0.1177450134 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002044_070 0.1185828818 - - Chlorophyll a-b binding protein 3, chloroplastic [Theobroma cacao]
19 Hb_169492_010 0.1187345381 - - PREDICTED: expansin-like B1 [Jatropha curcas]
20 Hb_002119_150 0.1191089045 - - hypothetical protein POPTR_0008s13870g [Populus trichocarpa]

Gene co-expression network

sample Hb_011214_080 Hb_011214_080 Hb_000538_110 Hb_000538_110 Hb_011214_080--Hb_000538_110 Hb_189208_080 Hb_189208_080 Hb_011214_080--Hb_189208_080 Hb_012760_120 Hb_012760_120 Hb_011214_080--Hb_012760_120 Hb_018487_040 Hb_018487_040 Hb_011214_080--Hb_018487_040 Hb_002250_040 Hb_002250_040 Hb_011214_080--Hb_002250_040 Hb_002675_220 Hb_002675_220 Hb_011214_080--Hb_002675_220 Hb_001097_030 Hb_001097_030 Hb_000538_110--Hb_001097_030 Hb_005062_100 Hb_005062_100 Hb_000538_110--Hb_005062_100 Hb_002119_150 Hb_002119_150 Hb_000538_110--Hb_002119_150 Hb_000029_210 Hb_000029_210 Hb_000538_110--Hb_000029_210 Hb_000538_110--Hb_012760_120 Hb_001104_070 Hb_001104_070 Hb_189208_080--Hb_001104_070 Hb_000920_340 Hb_000920_340 Hb_189208_080--Hb_000920_340 Hb_189208_080--Hb_002675_220 Hb_140595_030 Hb_140595_030 Hb_189208_080--Hb_140595_030 Hb_000260_520 Hb_000260_520 Hb_189208_080--Hb_000260_520 Hb_012760_120--Hb_018487_040 Hb_001488_160 Hb_001488_160 Hb_012760_120--Hb_001488_160 Hb_005483_040 Hb_005483_040 Hb_012760_120--Hb_005483_040 Hb_002044_070 Hb_002044_070 Hb_012760_120--Hb_002044_070 Hb_018487_040--Hb_002675_220 Hb_018487_040--Hb_002250_040 Hb_018487_040--Hb_001104_070 Hb_018487_040--Hb_005483_040 Hb_002329_050 Hb_002329_050 Hb_018487_040--Hb_002329_050 Hb_080048_030 Hb_080048_030 Hb_018487_040--Hb_080048_030 Hb_002250_040--Hb_002675_220 Hb_002250_040--Hb_005483_040 Hb_000540_080 Hb_000540_080 Hb_002250_040--Hb_000540_080 Hb_002250_040--Hb_001104_070 Hb_002250_040--Hb_005062_100 Hb_002675_220--Hb_001104_070 Hb_002675_220--Hb_080048_030 Hb_002675_220--Hb_005483_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.045096 0.437194 2.60615 8.18231 0.0542665 0.0636707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.035819 0.253669 0.0537179 0.313419 21.6518

CAGE analysis