Hb_002329_050

Information

Type -
Description -
Location Contig2329: 90172-91366
Sequence    

Annotation

kegg
ID rcu:RCOM_1104780
description hypothetical protein
nr
ID XP_002523043.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SAM4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1104780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24485: 90180-90706
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002329_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000268_050 0.0467919143 - - PREDICTED: tetrapyrrole-binding protein, chloroplastic [Jatropha curcas]
3 Hb_000883_080 0.0495768956 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_005483_040 0.0516920445 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
5 Hb_011362_010 0.0539120949 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
6 Hb_018487_040 0.0619880913 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
7 Hb_000928_260 0.0627230043 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
8 Hb_006573_240 0.0627702371 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
9 Hb_003787_030 0.0650939892 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006718_030 0.0653228059 - - ATPase, F1 complex, gamma subunit protein [Theobroma cacao]
11 Hb_002301_070 0.0767530406 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_002250_040 0.0784024778 - - PREDICTED: transcription repressor OFP17 [Jatropha curcas]
13 Hb_000540_080 0.0794920351 - - PREDICTED: laccase-17 [Jatropha curcas]
14 Hb_005675_030 0.082943658 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
15 Hb_000363_070 0.0857262604 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003528_100 0.0873841507 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
17 Hb_001790_060 0.088003968 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
18 Hb_005062_100 0.0881858543 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
19 Hb_000160_120 0.0887967889 - - conserved hypothetical protein [Ricinus communis]
20 Hb_033681_030 0.0904969354 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]

Gene co-expression network

sample Hb_002329_050 Hb_002329_050 Hb_000268_050 Hb_000268_050 Hb_002329_050--Hb_000268_050 Hb_000883_080 Hb_000883_080 Hb_002329_050--Hb_000883_080 Hb_005483_040 Hb_005483_040 Hb_002329_050--Hb_005483_040 Hb_011362_010 Hb_011362_010 Hb_002329_050--Hb_011362_010 Hb_018487_040 Hb_018487_040 Hb_002329_050--Hb_018487_040 Hb_000928_260 Hb_000928_260 Hb_002329_050--Hb_000928_260 Hb_000268_050--Hb_011362_010 Hb_003528_100 Hb_003528_100 Hb_000268_050--Hb_003528_100 Hb_000160_120 Hb_000160_120 Hb_000268_050--Hb_000160_120 Hb_001437_170 Hb_001437_170 Hb_000268_050--Hb_001437_170 Hb_096907_010 Hb_096907_010 Hb_000268_050--Hb_096907_010 Hb_000883_080--Hb_000928_260 Hb_000883_080--Hb_011362_010 Hb_000883_080--Hb_005483_040 Hb_000883_080--Hb_018487_040 Hb_006718_030 Hb_006718_030 Hb_000883_080--Hb_006718_030 Hb_005483_040--Hb_018487_040 Hb_002250_040 Hb_002250_040 Hb_005483_040--Hb_002250_040 Hb_005483_040--Hb_006718_030 Hb_005483_040--Hb_011362_010 Hb_000540_080 Hb_000540_080 Hb_011362_010--Hb_000540_080 Hb_011362_010--Hb_000160_120 Hb_011362_010--Hb_096907_010 Hb_002675_220 Hb_002675_220 Hb_018487_040--Hb_002675_220 Hb_018487_040--Hb_002250_040 Hb_001104_070 Hb_001104_070 Hb_018487_040--Hb_001104_070 Hb_080048_030 Hb_080048_030 Hb_018487_040--Hb_080048_030 Hb_002301_070 Hb_002301_070 Hb_000928_260--Hb_002301_070 Hb_003787_030 Hb_003787_030 Hb_000928_260--Hb_003787_030 Hb_006573_240 Hb_006573_240 Hb_000928_260--Hb_006573_240 Hb_010697_020 Hb_010697_020 Hb_000928_260--Hb_010697_020 Hb_004143_080 Hb_004143_080 Hb_000928_260--Hb_004143_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.507236 6.12106 10.9348 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.136966 30.4179

CAGE analysis