Hb_001437_170

Information

Type -
Description -
Location Contig1437: 173686-173997
Sequence    

Annotation

kegg
ID pop:POPTR_0009s01390g
description hypothetical protein
nr
ID XP_006378950.1
description hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5G5M3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s01390g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001437_170 0.0 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
2 Hb_096907_010 0.0069182231 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
3 Hb_000160_120 0.0101843591 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003528_100 0.0404296915 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
5 Hb_002391_340 0.040651761 - - RNA polymerase II largest subunit [Liriodendron tulipifera]
6 Hb_000115_030 0.0410048552 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 42 [Jatropha curcas]
7 Hb_065774_010 0.0468517139 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
8 Hb_001232_070 0.0535109274 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001472_150 0.0566330125 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
10 Hb_000268_050 0.0568991657 - - PREDICTED: tetrapyrrole-binding protein, chloroplastic [Jatropha curcas]
11 Hb_006483_040 0.0630450048 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
12 Hb_011362_010 0.0658722817 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
13 Hb_000540_080 0.0676312116 - - PREDICTED: laccase-17 [Jatropha curcas]
14 Hb_064445_020 0.067724436 - - PREDICTED: serine carboxypeptidase-like 34 [Populus euphratica]
15 Hb_001593_040 0.0701116582 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
16 Hb_002973_060 0.0705493722 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000077_040 0.0722803377 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
18 Hb_046825_010 0.0747642961 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
19 Hb_154038_010 0.078905065 - - cytochrome P450, putative [Ricinus communis]
20 Hb_003151_020 0.0789157264 - - Ankyrin repeat family protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_001437_170 Hb_001437_170 Hb_096907_010 Hb_096907_010 Hb_001437_170--Hb_096907_010 Hb_000160_120 Hb_000160_120 Hb_001437_170--Hb_000160_120 Hb_003528_100 Hb_003528_100 Hb_001437_170--Hb_003528_100 Hb_002391_340 Hb_002391_340 Hb_001437_170--Hb_002391_340 Hb_000115_030 Hb_000115_030 Hb_001437_170--Hb_000115_030 Hb_065774_010 Hb_065774_010 Hb_001437_170--Hb_065774_010 Hb_096907_010--Hb_000160_120 Hb_096907_010--Hb_000115_030 Hb_096907_010--Hb_003528_100 Hb_096907_010--Hb_002391_340 Hb_096907_010--Hb_065774_010 Hb_000160_120--Hb_003528_100 Hb_000160_120--Hb_000115_030 Hb_000160_120--Hb_065774_010 Hb_000160_120--Hb_002391_340 Hb_003528_100--Hb_065774_010 Hb_046825_010 Hb_046825_010 Hb_003528_100--Hb_046825_010 Hb_154064_010 Hb_154064_010 Hb_003528_100--Hb_154064_010 Hb_001232_070 Hb_001232_070 Hb_002391_340--Hb_001232_070 Hb_002391_340--Hb_065774_010 Hb_006483_040 Hb_006483_040 Hb_002391_340--Hb_006483_040 Hb_001472_150 Hb_001472_150 Hb_002391_340--Hb_001472_150 Hb_002973_060 Hb_002973_060 Hb_000115_030--Hb_002973_060 Hb_000077_040 Hb_000077_040 Hb_000115_030--Hb_000077_040 Hb_104014_020 Hb_104014_020 Hb_000115_030--Hb_104014_020 Hb_007317_030 Hb_007317_030 Hb_065774_010--Hb_007317_030 Hb_065774_010--Hb_001232_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.610708 1.14405 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.53243

CAGE analysis