Hb_001232_070

Information

Type -
Description -
Location Contig1232: 26800-27951
Sequence    

Annotation

kegg
ID rcu:RCOM_1495360
description hypothetical protein
nr
ID XP_002516082.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQR3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1495360 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001232_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002391_340 0.0137810545 - - RNA polymerase II largest subunit [Liriodendron tulipifera]
3 Hb_000329_120 0.0354112932 - - 21 kDa protein precursor, putative [Ricinus communis]
4 Hb_006483_040 0.0375809008 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
5 Hb_001472_150 0.0439443098 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
6 Hb_065774_010 0.0445658212 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
7 Hb_001437_170 0.0535109274 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
8 Hb_154038_010 0.0547490431 - - cytochrome P450, putative [Ricinus communis]
9 Hb_003151_020 0.0590801953 - - Ankyrin repeat family protein, putative [Theobroma cacao]
10 Hb_096907_010 0.0595008339 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
11 Hb_000160_120 0.0613633396 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005839_040 0.0640122508 - - hypothetical protein POPTR_0019s08420g [Populus trichocarpa]
13 Hb_003528_100 0.0640721816 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
14 Hb_064445_020 0.0649399861 - - PREDICTED: serine carboxypeptidase-like 34 [Populus euphratica]
15 Hb_085682_010 0.0665752281 - - -
16 Hb_007317_030 0.0667341693 - - -
17 Hb_008453_050 0.0680563459 - - PREDICTED: peroxidase 64 [Jatropha curcas]
18 Hb_000046_400 0.0739843494 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001593_040 0.0762694751 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
20 Hb_072771_010 0.0782329886 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001232_070 Hb_001232_070 Hb_002391_340 Hb_002391_340 Hb_001232_070--Hb_002391_340 Hb_000329_120 Hb_000329_120 Hb_001232_070--Hb_000329_120 Hb_006483_040 Hb_006483_040 Hb_001232_070--Hb_006483_040 Hb_001472_150 Hb_001472_150 Hb_001232_070--Hb_001472_150 Hb_065774_010 Hb_065774_010 Hb_001232_070--Hb_065774_010 Hb_001437_170 Hb_001437_170 Hb_001232_070--Hb_001437_170 Hb_002391_340--Hb_065774_010 Hb_002391_340--Hb_001437_170 Hb_002391_340--Hb_006483_040 Hb_002391_340--Hb_001472_150 Hb_096907_010 Hb_096907_010 Hb_002391_340--Hb_096907_010 Hb_085682_010 Hb_085682_010 Hb_000329_120--Hb_085682_010 Hb_000329_120--Hb_002391_340 Hb_000329_120--Hb_006483_040 Hb_004807_010 Hb_004807_010 Hb_000329_120--Hb_004807_010 Hb_005839_040 Hb_005839_040 Hb_000329_120--Hb_005839_040 Hb_154038_010 Hb_154038_010 Hb_006483_040--Hb_154038_010 Hb_064445_020 Hb_064445_020 Hb_006483_040--Hb_064445_020 Hb_008453_050 Hb_008453_050 Hb_006483_040--Hb_008453_050 Hb_006483_040--Hb_001472_150 Hb_001472_150--Hb_154038_010 Hb_001472_150--Hb_064445_020 Hb_001472_150--Hb_008453_050 Hb_003528_100 Hb_003528_100 Hb_065774_010--Hb_003528_100 Hb_007317_030 Hb_007317_030 Hb_065774_010--Hb_007317_030 Hb_065774_010--Hb_001437_170 Hb_000160_120 Hb_000160_120 Hb_065774_010--Hb_000160_120 Hb_001437_170--Hb_096907_010 Hb_001437_170--Hb_000160_120 Hb_001437_170--Hb_003528_100 Hb_000115_030 Hb_000115_030 Hb_001437_170--Hb_000115_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.40314 1.99162 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 4.08519

CAGE analysis