Hb_065774_010

Information

Type -
Description -
Location Contig65774: 823-1116
Sequence    

Annotation

kegg
ID mdm:103408190
description peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic-like
nr
ID XP_012065241.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
swissprot
ID O22870
description Peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic OS=Arabidopsis thaliana GN=FKBP16-3 PE=1 SV=2
trembl
ID A0A067L672
description Peptidyl-prolyl cis-trans isomerase OS=Jatropha curcas GN=JCGZ_20927 PE=4 SV=1
Gene Ontology
ID GO:0009579
description peptidyl-prolyl cis-trans isomerase fkbp16- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52843: 698-1033
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065774_010 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
2 Hb_003528_100 0.0252539409 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
3 Hb_002391_340 0.0347935089 - - RNA polymerase II largest subunit [Liriodendron tulipifera]
4 Hb_007317_030 0.0428743422 - - -
5 Hb_001232_070 0.0445658212 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001437_170 0.0468517139 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
7 Hb_000160_120 0.0470704874 - - conserved hypothetical protein [Ricinus communis]
8 Hb_154064_010 0.0494865882 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
9 Hb_046825_010 0.0509818815 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
10 Hb_096907_010 0.0533664027 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
11 Hb_029879_020 0.0542294263 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
12 Hb_000046_400 0.0594687003 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000268_050 0.0617483475 - - PREDICTED: tetrapyrrole-binding protein, chloroplastic [Jatropha curcas]
14 Hb_001472_150 0.0705246162 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
15 Hb_000329_120 0.0728266639 - - 21 kDa protein precursor, putative [Ricinus communis]
16 Hb_003151_020 0.0742348966 - - Ankyrin repeat family protein, putative [Theobroma cacao]
17 Hb_127349_020 0.0751000941 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
18 Hb_180094_010 0.0759886769 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
19 Hb_006483_040 0.0776247965 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
20 Hb_000115_030 0.0874384697 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 42 [Jatropha curcas]

Gene co-expression network

sample Hb_065774_010 Hb_065774_010 Hb_003528_100 Hb_003528_100 Hb_065774_010--Hb_003528_100 Hb_002391_340 Hb_002391_340 Hb_065774_010--Hb_002391_340 Hb_007317_030 Hb_007317_030 Hb_065774_010--Hb_007317_030 Hb_001232_070 Hb_001232_070 Hb_065774_010--Hb_001232_070 Hb_001437_170 Hb_001437_170 Hb_065774_010--Hb_001437_170 Hb_000160_120 Hb_000160_120 Hb_065774_010--Hb_000160_120 Hb_003528_100--Hb_000160_120 Hb_046825_010 Hb_046825_010 Hb_003528_100--Hb_046825_010 Hb_003528_100--Hb_001437_170 Hb_096907_010 Hb_096907_010 Hb_003528_100--Hb_096907_010 Hb_154064_010 Hb_154064_010 Hb_003528_100--Hb_154064_010 Hb_002391_340--Hb_001232_070 Hb_002391_340--Hb_001437_170 Hb_006483_040 Hb_006483_040 Hb_002391_340--Hb_006483_040 Hb_001472_150 Hb_001472_150 Hb_002391_340--Hb_001472_150 Hb_002391_340--Hb_096907_010 Hb_029879_020 Hb_029879_020 Hb_007317_030--Hb_029879_020 Hb_000046_400 Hb_000046_400 Hb_007317_030--Hb_000046_400 Hb_007317_030--Hb_154064_010 Hb_000987_030 Hb_000987_030 Hb_007317_030--Hb_000987_030 Hb_000251_150 Hb_000251_150 Hb_007317_030--Hb_000251_150 Hb_000329_120 Hb_000329_120 Hb_001232_070--Hb_000329_120 Hb_001232_070--Hb_006483_040 Hb_001232_070--Hb_001472_150 Hb_001232_070--Hb_001437_170 Hb_001437_170--Hb_096907_010 Hb_001437_170--Hb_000160_120 Hb_000115_030 Hb_000115_030 Hb_001437_170--Hb_000115_030 Hb_000160_120--Hb_096907_010 Hb_000160_120--Hb_000115_030 Hb_000160_120--Hb_002391_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.93693 2.54801 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 6.63386

CAGE analysis