Hb_154064_010

Information

Type -
Description -
Location Contig154064: 547-1233
Sequence    

Annotation

kegg
ID pop:POPTR_0013s08070g
description hypothetical protein
nr
ID XP_012460613.1
description PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2V0E7
description Gossypium raimondii chromosome 12, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_012G015800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_154064_010 0.0 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
2 Hb_046825_010 0.0245528125 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
3 Hb_127349_020 0.0342657894 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
4 Hb_180094_010 0.0401487965 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
5 Hb_003528_100 0.0465377442 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
6 Hb_007317_030 0.0470600615 - - -
7 Hb_029879_020 0.048991815 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
8 Hb_065774_010 0.0494865882 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
9 Hb_010666_020 0.0553427932 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
10 Hb_000152_300 0.0586955369 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
11 Hb_000433_040 0.0653922316 - - -
12 Hb_000046_400 0.0662799195 - - conserved hypothetical protein [Ricinus communis]
13 Hb_081344_010 0.0682359622 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
14 Hb_000140_040 0.0708394389 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
15 Hb_031862_220 0.0715791043 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
16 Hb_000940_060 0.0732476371 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
17 Hb_002301_070 0.0738958873 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_003787_030 0.0772971573 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010697_020 0.0788181905 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000268_050 0.0790445244 - - PREDICTED: tetrapyrrole-binding protein, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_154064_010 Hb_154064_010 Hb_046825_010 Hb_046825_010 Hb_154064_010--Hb_046825_010 Hb_127349_020 Hb_127349_020 Hb_154064_010--Hb_127349_020 Hb_180094_010 Hb_180094_010 Hb_154064_010--Hb_180094_010 Hb_003528_100 Hb_003528_100 Hb_154064_010--Hb_003528_100 Hb_007317_030 Hb_007317_030 Hb_154064_010--Hb_007317_030 Hb_029879_020 Hb_029879_020 Hb_154064_010--Hb_029879_020 Hb_046825_010--Hb_180094_010 Hb_046825_010--Hb_127349_020 Hb_046825_010--Hb_003528_100 Hb_065774_010 Hb_065774_010 Hb_046825_010--Hb_065774_010 Hb_000140_040 Hb_000140_040 Hb_046825_010--Hb_000140_040 Hb_127349_020--Hb_180094_010 Hb_000152_300 Hb_000152_300 Hb_127349_020--Hb_000152_300 Hb_010666_020 Hb_010666_020 Hb_127349_020--Hb_010666_020 Hb_000433_040 Hb_000433_040 Hb_127349_020--Hb_000433_040 Hb_180094_010--Hb_000152_300 Hb_180094_010--Hb_010666_020 Hb_180094_010--Hb_000140_040 Hb_180094_010--Hb_000433_040 Hb_003528_100--Hb_065774_010 Hb_000160_120 Hb_000160_120 Hb_003528_100--Hb_000160_120 Hb_001437_170 Hb_001437_170 Hb_003528_100--Hb_001437_170 Hb_096907_010 Hb_096907_010 Hb_003528_100--Hb_096907_010 Hb_007317_030--Hb_029879_020 Hb_000046_400 Hb_000046_400 Hb_007317_030--Hb_000046_400 Hb_007317_030--Hb_065774_010 Hb_000987_030 Hb_000987_030 Hb_007317_030--Hb_000987_030 Hb_000251_150 Hb_000251_150 Hb_007317_030--Hb_000251_150 Hb_029879_020--Hb_000046_400 Hb_029879_020--Hb_000251_150 Hb_029879_020--Hb_000987_030 Hb_029879_020--Hb_065774_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.07436 1.13787 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 3.98621

CAGE analysis