Hb_003528_100

Information

Type -
Description -
Location Contig3528: 186681-190851
Sequence    

Annotation

kegg
ID rcu:RCOM_0802770
description beta-1,3-glucuronyltransferase, putative (EC:2.4.1.135)
nr
ID XP_002516557.1
description beta-1,3-glucuronyltransferase, putative [Ricinus communis]
swissprot
ID Q9SXC4
description Probable beta-1,4-xylosyltransferase IRX9H OS=Arabidopsis thaliana GN=IRX9H PE=2 SV=2
trembl
ID B9RS38
description Beta-1,3-glucuronyltransferase, putative OS=Ricinus communis GN=RCOM_0802770 PE=4 SV=1
Gene Ontology
ID GO:0016757
description probable beta- -xylosyltransferase irx9h

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36634: 190475-191782 , PASA_asmbl_36635: 186980-191804 , PASA_asmbl_36636: 186980-191797 , PASA_asmbl_36637: 189016-189274
cDNA
(Sanger)
(ID:Location)		 018_L23.ab1: 187131-191824

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003528_100 0.0 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
2 Hb_065774_010 0.0252539409 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
3 Hb_000160_120 0.0351648892 - - conserved hypothetical protein [Ricinus communis]
4 Hb_046825_010 0.0356167003 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
5 Hb_001437_170 0.0404296915 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
6 Hb_096907_010 0.044901319 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
7 Hb_154064_010 0.0465377442 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
8 Hb_002391_340 0.0514508296 - - RNA polymerase II largest subunit [Liriodendron tulipifera]
9 Hb_000268_050 0.0518584788 - - PREDICTED: tetrapyrrole-binding protein, chloroplastic [Jatropha curcas]
10 Hb_180094_010 0.0589088948 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
11 Hb_127349_020 0.060718674 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
12 Hb_007317_030 0.0619527681 - - -
13 Hb_001232_070 0.0640721816 - - conserved hypothetical protein [Ricinus communis]
14 Hb_029879_020 0.069969138 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
15 Hb_000140_040 0.0748178883 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
16 Hb_000046_400 0.0777196683 - - conserved hypothetical protein [Ricinus communis]
17 Hb_011362_010 0.0779011543 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
18 Hb_000363_070 0.0787560283 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000115_030 0.0797561645 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 42 [Jatropha curcas]
20 Hb_001790_060 0.0798680666 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]

Gene co-expression network

sample Hb_003528_100 Hb_003528_100 Hb_065774_010 Hb_065774_010 Hb_003528_100--Hb_065774_010 Hb_000160_120 Hb_000160_120 Hb_003528_100--Hb_000160_120 Hb_046825_010 Hb_046825_010 Hb_003528_100--Hb_046825_010 Hb_001437_170 Hb_001437_170 Hb_003528_100--Hb_001437_170 Hb_096907_010 Hb_096907_010 Hb_003528_100--Hb_096907_010 Hb_154064_010 Hb_154064_010 Hb_003528_100--Hb_154064_010 Hb_002391_340 Hb_002391_340 Hb_065774_010--Hb_002391_340 Hb_007317_030 Hb_007317_030 Hb_065774_010--Hb_007317_030 Hb_001232_070 Hb_001232_070 Hb_065774_010--Hb_001232_070 Hb_065774_010--Hb_001437_170 Hb_065774_010--Hb_000160_120 Hb_000160_120--Hb_001437_170 Hb_000160_120--Hb_096907_010 Hb_000115_030 Hb_000115_030 Hb_000160_120--Hb_000115_030 Hb_000160_120--Hb_002391_340 Hb_046825_010--Hb_154064_010 Hb_180094_010 Hb_180094_010 Hb_046825_010--Hb_180094_010 Hb_127349_020 Hb_127349_020 Hb_046825_010--Hb_127349_020 Hb_046825_010--Hb_065774_010 Hb_000140_040 Hb_000140_040 Hb_046825_010--Hb_000140_040 Hb_001437_170--Hb_096907_010 Hb_001437_170--Hb_002391_340 Hb_001437_170--Hb_000115_030 Hb_096907_010--Hb_000115_030 Hb_096907_010--Hb_002391_340 Hb_096907_010--Hb_065774_010 Hb_154064_010--Hb_127349_020 Hb_154064_010--Hb_180094_010 Hb_154064_010--Hb_007317_030 Hb_029879_020 Hb_029879_020 Hb_154064_010--Hb_029879_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.11398 0.167659 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.460086

CAGE analysis