Hb_007317_030

Information

Type -
Description -
Location Contig7317: 27326-29693
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007317_030 0.0 - - -
2 Hb_029879_020 0.0225928527 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
3 Hb_000046_400 0.0351705499 - - conserved hypothetical protein [Ricinus communis]
4 Hb_065774_010 0.0428743422 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
5 Hb_154064_010 0.0470600615 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
6 Hb_000987_030 0.0479243043 transcription factor TF Family: BES1 hypothetical protein POPTR_0016s13350g [Populus trichocarpa]
7 Hb_000251_150 0.0515796684 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
8 Hb_158001_010 0.0554660571 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
9 Hb_000979_120 0.0609744463 - - Pectinesterase-1 precursor, putative [Ricinus communis]
10 Hb_003528_100 0.0619527681 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
11 Hb_031862_220 0.0636182425 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
12 Hb_002391_340 0.0651539939 - - RNA polymerase II largest subunit [Liriodendron tulipifera]
13 Hb_046825_010 0.0659953943 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
14 Hb_001232_070 0.0667341693 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001049_130 0.0694298158 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
16 Hb_000179_010 0.0708903881 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
17 Hb_005743_050 0.0723916699 - - unnamed protein product [Coffea canephora]
18 Hb_001053_070 0.0752707212 desease resistance Gene Name: NB-ARC hypothetical protein EUGRSUZ_B02976 [Eucalyptus grandis]
19 Hb_085682_010 0.0757901211 - - -
20 Hb_000329_120 0.0764006675 - - 21 kDa protein precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_007317_030 Hb_007317_030 Hb_029879_020 Hb_029879_020 Hb_007317_030--Hb_029879_020 Hb_000046_400 Hb_000046_400 Hb_007317_030--Hb_000046_400 Hb_065774_010 Hb_065774_010 Hb_007317_030--Hb_065774_010 Hb_154064_010 Hb_154064_010 Hb_007317_030--Hb_154064_010 Hb_000987_030 Hb_000987_030 Hb_007317_030--Hb_000987_030 Hb_000251_150 Hb_000251_150 Hb_007317_030--Hb_000251_150 Hb_029879_020--Hb_000046_400 Hb_029879_020--Hb_000251_150 Hb_029879_020--Hb_000987_030 Hb_029879_020--Hb_154064_010 Hb_029879_020--Hb_065774_010 Hb_000046_400--Hb_000251_150 Hb_000179_010 Hb_000179_010 Hb_000046_400--Hb_000179_010 Hb_000046_400--Hb_000987_030 Hb_158001_010 Hb_158001_010 Hb_000046_400--Hb_158001_010 Hb_003528_100 Hb_003528_100 Hb_065774_010--Hb_003528_100 Hb_002391_340 Hb_002391_340 Hb_065774_010--Hb_002391_340 Hb_001232_070 Hb_001232_070 Hb_065774_010--Hb_001232_070 Hb_001437_170 Hb_001437_170 Hb_065774_010--Hb_001437_170 Hb_000160_120 Hb_000160_120 Hb_065774_010--Hb_000160_120 Hb_046825_010 Hb_046825_010 Hb_154064_010--Hb_046825_010 Hb_127349_020 Hb_127349_020 Hb_154064_010--Hb_127349_020 Hb_180094_010 Hb_180094_010 Hb_154064_010--Hb_180094_010 Hb_154064_010--Hb_003528_100 Hb_005743_050 Hb_005743_050 Hb_000987_030--Hb_005743_050 Hb_000987_030--Hb_000251_150 Hb_000987_030--Hb_158001_010 Hb_001049_130 Hb_001049_130 Hb_000987_030--Hb_001049_130 Hb_000979_120 Hb_000979_120 Hb_000987_030--Hb_000979_120 Hb_031862_220 Hb_031862_220 Hb_000987_030--Hb_031862_220 Hb_000251_150--Hb_005743_050 Hb_000251_150--Hb_000179_010 Hb_004452_070 Hb_004452_070 Hb_000251_150--Hb_004452_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.07402 1.98888 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 5.87939

CAGE analysis