Hb_127349_020

Information

Type -
Description -
Location Contig127349: 23638-25686
Sequence    

Annotation

kegg
ID sot:102604542
description uncharacterized LOC102604542
nr
ID XP_012066659.1
description PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L1T8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00233 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08355: 11757-23850
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_127349_020 0.0 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
2 Hb_180094_010 0.0092303016 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
3 Hb_046825_010 0.0252392143 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
4 Hb_000152_300 0.0273056451 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
5 Hb_010666_020 0.0292474579 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
6 Hb_154064_010 0.0342657894 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
7 Hb_000433_040 0.0363812513 - - -
8 Hb_081344_010 0.0383955825 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
9 Hb_000140_040 0.0431450684 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
10 Hb_003528_100 0.060718674 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
11 Hb_000940_060 0.0639366021 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
12 Hb_158597_010 0.0641492981 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
13 Hb_029584_020 0.0646444438 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002301_070 0.0678335452 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_003805_110 0.0723154304 - - PREDICTED: laccase-11-like [Jatropha curcas]
16 Hb_003787_030 0.0732370142 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004143_080 0.0744462888 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
18 Hb_065774_010 0.0751000941 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
19 Hb_001097_110 0.0792414904 - - gibberellin 20-oxidase, putative [Ricinus communis]
20 Hb_029879_020 0.0809822387 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]

Gene co-expression network

sample Hb_127349_020 Hb_127349_020 Hb_180094_010 Hb_180094_010 Hb_127349_020--Hb_180094_010 Hb_046825_010 Hb_046825_010 Hb_127349_020--Hb_046825_010 Hb_000152_300 Hb_000152_300 Hb_127349_020--Hb_000152_300 Hb_010666_020 Hb_010666_020 Hb_127349_020--Hb_010666_020 Hb_154064_010 Hb_154064_010 Hb_127349_020--Hb_154064_010 Hb_000433_040 Hb_000433_040 Hb_127349_020--Hb_000433_040 Hb_180094_010--Hb_046825_010 Hb_180094_010--Hb_000152_300 Hb_180094_010--Hb_010666_020 Hb_000140_040 Hb_000140_040 Hb_180094_010--Hb_000140_040 Hb_180094_010--Hb_000433_040 Hb_046825_010--Hb_154064_010 Hb_003528_100 Hb_003528_100 Hb_046825_010--Hb_003528_100 Hb_065774_010 Hb_065774_010 Hb_046825_010--Hb_065774_010 Hb_046825_010--Hb_000140_040 Hb_000152_300--Hb_000433_040 Hb_081344_010 Hb_081344_010 Hb_000152_300--Hb_081344_010 Hb_000152_300--Hb_010666_020 Hb_029584_020 Hb_029584_020 Hb_000152_300--Hb_029584_020 Hb_010666_020--Hb_000433_040 Hb_010666_020--Hb_081344_010 Hb_158597_010 Hb_158597_010 Hb_010666_020--Hb_158597_010 Hb_154064_010--Hb_180094_010 Hb_154064_010--Hb_003528_100 Hb_007317_030 Hb_007317_030 Hb_154064_010--Hb_007317_030 Hb_029879_020 Hb_029879_020 Hb_154064_010--Hb_029879_020 Hb_000433_040--Hb_081344_010 Hb_000433_040--Hb_029584_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.022679 0.026154 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.103507

CAGE analysis